MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:385.5 nTPM
HPA Brain:460.7 nTPM
GTEx:385.5 nTPM
FANTOM5:43.5 Scaled Tags Per Million
Pig:415.3 nTPM
Mouse:557.2 nTPM
Allen mouse:25.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 460.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 258.4
2219 Male, age 76, both hemispheres 422.2
1827 Male, age 72, unknown 334.7
2411 Female, age 72, unknown 329.1
2828 Female, age 72, unknown 309.3
1870 Female, age 42, unknown 239.2
2586 Male, age 75, left hemisphere 238.0
2019 Male, age 18, unknown 216.0
1833 Male, age 53, unknown 169.6
2666 Male, age 74, left hemisphere 167.6
1830 Male, age 51, unknown 158.6
Dorsal raphe nucleus
nTPM: 350.4
2298 Female, age 72, unknown 545.8
2750 Male, age 76, both hemispheres 383.0
2047 Male, age 72, unknown 379.0
1828 Male, age 53, unknown 268.8
2016 Female, age 72, unknown 175.5
Inferior colliculus
nTPM: 191.3
2097 Female, age 72, unknown 255.1
1848 Female, age 42, unknown 180.4
2849 Male, age 72, unknown 170.9
1890 Male, age 53, unknown 158.6
Median raphe nucleus
nTPM: 460.7
2220 Male, age 76, midline 460.7
Periaquaductal grey, anterior
nTPM: 340.5
1795 Male, age 51, unknown 428.6
1947 Male, age 18, unknown 332.0
2502 Female, age 75, unknown 261.0
Periaquaductal grey, dorsal
nTPM: 207.0
1840 Male, age 53, unknown 235.8
2850 Male, age 76, both hemispheres 209.1
2464 Female, age 72, unknown 196.9
1831 Male, age 72, unknown 186.4
Periaquaductal grey, lateral
nTPM: 235.6
2272 Male, age 74, both hemispheres 298.1
2140 Male, age 76, both hemispheres 208.3
2053 Male, age 18, unknown 200.5
Pretectal area
nTPM: 301.1
2224 Female, age 72, unknown 382.1
1816 Male, age 51, unknown 375.8
1944 Female, age 72, unknown 365.4
2007 Male, age 72, unknown 362.8
2667 Female, age 75, unknown 353.3
2273 Male, age 74, both hemispheres 307.7
1817 Female, age 42, unknown 296.2
1815 Male, age 53, unknown 275.9
2825 Male, age 18, unknown 238.1
2407 Male, age 75, both hemispheres 182.6
2316 Male, age 76, right hemisphere 172.6
Red nucleus
nTPM: 173.4
2785 Male, age 18, unknown 224.9
1954 Female, age 42, unknown 211.9
1821 Female, age 72, unknown 196.5
2227 Male, age 72, unknown 181.8
2769 Male, age 72, unknown 180.4
1904 Male, age 53, unknown 177.8
2725 Female, age 75, unknown 169.1
1865 Male, age 51, unknown 163.4
2503 Female, age 72, unknown 162.6
2584 Male, age 75, left hemisphere 147.0
2588 Male, age 74, left hemisphere 144.0
2823 Male, age 76, right hemisphere 121.9
Substantia nigra
nTPM: 422.6
1916 Female, age 42, unknown 856.5
1941 Male, age 53, unknown 573.4
1851 Male, age 51, unknown 512.9
2409 Female, age 72, unknown 413.9
2665 Male, age 74, both hemispheres 384.5
2241 Male, age 72, unknown 350.7
1889 Female, age 72, unknown 339.2
2699 Male, age 18, unknown 317.6
2590 Female, age 75, unknown 301.2
2583 Male, age 75, right hemisphere 175.7
Superior colliculus
nTPM: 230.6
1796 Male, age 53, unknown 359.5
2261 Male, age 18, unknown 327.2
2087 Female, age 72, unknown 324.0
2668 Female, age 75, unknown 299.3
1839 Male, age 51, unknown 191.8
1895 Male, age 76, right hemisphere 180.6
2587 Male, age 74, left hemisphere 166.6
1913 Female, age 42, unknown 165.9
2664 Male, age 75, both hemispheres 158.5
1995 Male, age 72, unknown 132.9
Ventral tegmental area
nTPM: 387.1
2410 Female, age 72, unknown 524.3
1915 Female, age 42, unknown 471.0
2218 Male, age 76, both hemispheres 454.5
1942 Male, age 51, unknown 314.1
2021 Male, age 53, unknown 284.3
2223 Female, age 72, unknown 274.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 385.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 385.5
Samples: 139

Max nTPM: 1642.5
Min nTPM: 43.7
Std nTPM: 307.7
Median nTPM: 293.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 1642.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 1458.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 1455.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1335.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1061.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 1007.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 982.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 919.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 911.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 890.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 887.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.5
FF:10158-103A5 76 years, female 43.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 415.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 385.4
Samples: 4

Max nTPM: 695.1
Min nTPM: 154.8
Sample A Female 695.1
Sample B Female 260.6
Sample C Male 431.0
Sample D Male 154.8
Midbrain
nTPM: 415.3
Samples: 4

Max nTPM: 521.1
Min nTPM: 294.9
Sample A Female 521.1
Sample B Female 294.9
Sample C Male 501.4
Sample D Male 343.7
Periaqueductal gray
nTPM: 271.2
Samples: 3

Max nTPM: 335.0
Min nTPM: 234.7
Sample B Female 243.8
Sample C Male 335.0
Sample D Male 234.7
Superior colliculi
nTPM: 348.5
Samples: 4

Max nTPM: 474.8
Min nTPM: 181.8
Sample A Female 423.1
Sample B Female 181.8
Sample C Male 474.8
Sample D Male 314.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 557.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 557.2
Samples: 4

Max nTPM: 598.0
Min nTPM: 502.1
Sample A Male 598.0
Sample B Male 534.4
Sample C Female 502.1
Sample D Female 594.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 25.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 25.0
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 26.8
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 25.4
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 22.6

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