MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:232.4 nTPM
HPA Brain:285.0 nTPM
GTEx:232.4 nTPM
FANTOM5:157.9 Scaled Tags Per Million
Pig:220.6 nTPM
Mouse:431.7 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 285.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 247.1
2586 Male, age 75, left hemisphere 382.1
2411 Female, age 72, unknown 283.4
2666 Male, age 74, left hemisphere 283.2
1827 Male, age 72, unknown 277.5
1870 Female, age 42, unknown 252.1
2828 Female, age 72, unknown 220.6
1833 Male, age 53, unknown 209.6
2019 Male, age 18, unknown 200.8
1830 Male, age 51, unknown 194.7
2219 Male, age 76, both hemispheres 167.1
Dorsal raphe nucleus
nTPM: 268.7
2298 Female, age 72, unknown 344.0
2047 Male, age 72, unknown 290.0
2750 Male, age 76, both hemispheres 260.1
1828 Male, age 53, unknown 243.8
2016 Female, age 72, unknown 205.7
Inferior colliculus
nTPM: 208.5
2097 Female, age 72, unknown 235.6
2849 Male, age 72, unknown 210.5
1848 Female, age 42, unknown 199.1
1890 Male, age 53, unknown 188.8
Median raphe nucleus
nTPM: 266.4
2220 Male, age 76, midline 266.4
Periaquaductal grey, anterior
nTPM: 285.0
1947 Male, age 18, unknown 300.9
1795 Male, age 51, unknown 289.4
2502 Female, age 75, unknown 264.6
Periaquaductal grey, dorsal
nTPM: 211.5
1840 Male, age 53, unknown 286.6
2464 Female, age 72, unknown 190.9
2850 Male, age 76, both hemispheres 188.3
1831 Male, age 72, unknown 180.2
Periaquaductal grey, lateral
nTPM: 188.4
2053 Male, age 18, unknown 220.5
2140 Male, age 76, both hemispheres 190.4
2272 Male, age 74, both hemispheres 154.2
Pretectal area
nTPM: 238.5
1816 Male, age 51, unknown 288.4
2007 Male, age 72, unknown 279.3
2667 Female, age 75, unknown 270.6
2224 Female, age 72, unknown 259.5
1817 Female, age 42, unknown 250.8
2825 Male, age 18, unknown 249.1
1944 Female, age 72, unknown 240.3
1815 Male, age 53, unknown 227.5
2407 Male, age 75, both hemispheres 192.9
2273 Male, age 74, both hemispheres 183.6
2316 Male, age 76, right hemisphere 181.8
Red nucleus
nTPM: 194.9
1821 Female, age 72, unknown 242.7
2584 Male, age 75, left hemisphere 240.5
2725 Female, age 75, unknown 198.5
2769 Male, age 72, unknown 197.5
2588 Male, age 74, left hemisphere 196.9
2227 Male, age 72, unknown 196.7
2503 Female, age 72, unknown 191.4
2785 Male, age 18, unknown 189.7
1954 Female, age 42, unknown 186.9
1904 Male, age 53, unknown 185.0
1865 Male, age 51, unknown 162.0
2823 Male, age 76, right hemisphere 151.2
Substantia nigra
nTPM: 248.2
1916 Female, age 42, unknown 302.3
1851 Male, age 51, unknown 284.8
2665 Male, age 74, both hemispheres 267.8
2241 Male, age 72, unknown 262.0
2583 Male, age 75, right hemisphere 260.6
1889 Female, age 72, unknown 258.0
1941 Male, age 53, unknown 248.3
2409 Female, age 72, unknown 209.9
2590 Female, age 75, unknown 197.2
2699 Male, age 18, unknown 191.3
Superior colliculus
nTPM: 223.9
2664 Male, age 75, both hemispheres 290.2
2261 Male, age 18, unknown 260.8
1796 Male, age 53, unknown 259.6
2668 Female, age 75, unknown 250.1
1839 Male, age 51, unknown 227.5
2087 Female, age 72, unknown 220.1
1895 Male, age 76, right hemisphere 203.9
2587 Male, age 74, left hemisphere 193.2
1913 Female, age 42, unknown 182.8
1995 Male, age 72, unknown 150.7
Ventral tegmental area
nTPM: 247.8
2410 Female, age 72, unknown 284.4
1915 Female, age 42, unknown 278.3
1942 Male, age 51, unknown 243.7
2223 Female, age 72, unknown 235.9
2021 Male, age 53, unknown 222.4
2218 Male, age 76, both hemispheres 222.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 232.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 232.4
Samples: 139

Max nTPM: 393.0
Min nTPM: 141.9
Std nTPM: 49.9
Median nTPM: 223.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 393.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 369.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 351.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 351.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 348.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 341.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 321.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 319.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 315.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 314.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 313.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 157.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 157.9
FF:10158-103A5 76 years, female 157.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 220.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 220.6
Samples: 4

Max nTPM: 315.6
Min nTPM: 120.8
Sample A Female 315.6
Sample B Female 178.6
Sample C Male 267.4
Sample D Male 120.8
Midbrain
nTPM: 216.6
Samples: 4

Max nTPM: 265.0
Min nTPM: 179.2
Sample A Female 210.2
Sample B Female 179.2
Sample C Male 265.0
Sample D Male 211.9
Periaqueductal gray
nTPM: 180.2
Samples: 3

Max nTPM: 217.7
Min nTPM: 157.7
Sample B Female 165.2
Sample C Male 217.7
Sample D Male 157.7
Superior colliculi
nTPM: 215.7
Samples: 4

Max nTPM: 261.6
Min nTPM: 191.4
Sample A Female 261.6
Sample B Female 204.9
Sample C Male 204.8
Sample D Male 191.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 431.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 431.7
Samples: 4

Max nTPM: 442.0
Min nTPM: 419.3
Sample A Male 436.1
Sample B Male 429.2
Sample C Female 419.3
Sample D Female 442.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
67764936 Antisense, RP_040916_02_F04, Mouse strain C57BL/6J (56 days, male) 15.9

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