MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.3 nTPM
HPA Brain:56.1 nTPM
GTEx:10.3 nTPM
FANTOM5:194.1 Scaled Tags Per Million
Pig:36.6 nTPM
Mouse:29.7 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.9
2411 Female, age 72, unknown 62.5
1870 Female, age 42, unknown 60.6
1830 Male, age 51, unknown 60.3
1833 Male, age 53, unknown 60.1
2586 Male, age 75, left hemisphere 53.7
2019 Male, age 18, unknown 50.3
2219 Male, age 76, both hemispheres 49.0
2828 Female, age 72, unknown 47.7
1827 Male, age 72, unknown 44.2
2666 Male, age 74, left hemisphere 40.3
Dorsal raphe nucleus
nTPM: 47.9
2750 Male, age 76, both hemispheres 64.0
2016 Female, age 72, unknown 46.5
1828 Male, age 53, unknown 44.6
2298 Female, age 72, unknown 42.4
2047 Male, age 72, unknown 42.0
Inferior colliculus
nTPM: 48.1
2849 Male, age 72, unknown 51.2
1848 Female, age 42, unknown 49.7
1890 Male, age 53, unknown 49.0
2097 Female, age 72, unknown 42.5
Median raphe nucleus
nTPM: 44.0
2220 Male, age 76, midline 44.0
Periaquaductal grey, anterior
nTPM: 48.1
2502 Female, age 75, unknown 52.2
1947 Male, age 18, unknown 51.5
1795 Male, age 51, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 44.9
2850 Male, age 76, both hemispheres 48.0
2464 Female, age 72, unknown 45.8
1840 Male, age 53, unknown 45.5
1831 Male, age 72, unknown 40.3
Periaquaductal grey, lateral
nTPM: 47.0
2272 Male, age 74, both hemispheres 49.6
2140 Male, age 76, both hemispheres 46.2
2053 Male, age 18, unknown 45.3
Pretectal area
nTPM: 45.1
2316 Male, age 76, right hemisphere 50.5
2007 Male, age 72, unknown 49.2
2825 Male, age 18, unknown 48.4
2667 Female, age 75, unknown 47.8
2273 Male, age 74, both hemispheres 46.6
2407 Male, age 75, both hemispheres 46.4
1815 Male, age 53, unknown 46.0
2224 Female, age 72, unknown 42.8
1817 Female, age 42, unknown 42.5
1944 Female, age 72, unknown 39.0
1816 Male, age 51, unknown 37.0
Red nucleus
nTPM: 56.1
1865 Male, age 51, unknown 63.1
2503 Female, age 72, unknown 60.6
2769 Male, age 72, unknown 60.2
2785 Male, age 18, unknown 58.3
1904 Male, age 53, unknown 58.0
2227 Male, age 72, unknown 57.6
1821 Female, age 72, unknown 56.8
2823 Male, age 76, right hemisphere 55.3
1954 Female, age 42, unknown 54.2
2588 Male, age 74, left hemisphere 53.0
2584 Male, age 75, left hemisphere 51.2
2725 Female, age 75, unknown 44.9
Substantia nigra
nTPM: 44.5
2583 Male, age 75, right hemisphere 51.4
2590 Female, age 75, unknown 51.4
2409 Female, age 72, unknown 49.8
1889 Female, age 72, unknown 46.8
1941 Male, age 53, unknown 45.3
1851 Male, age 51, unknown 42.8
2699 Male, age 18, unknown 41.9
2241 Male, age 72, unknown 41.7
1916 Female, age 42, unknown 38.3
2665 Male, age 74, both hemispheres 35.9
Superior colliculus
nTPM: 48.9
1913 Female, age 42, unknown 63.2
1995 Male, age 72, unknown 58.2
1839 Male, age 51, unknown 54.5
1895 Male, age 76, right hemisphere 52.8
2587 Male, age 74, left hemisphere 51.8
2261 Male, age 18, unknown 45.4
2668 Female, age 75, unknown 44.5
1796 Male, age 53, unknown 42.1
2664 Male, age 75, both hemispheres 41.9
2087 Female, age 72, unknown 34.5
Ventral tegmental area
nTPM: 48.4
2223 Female, age 72, unknown 57.0
2410 Female, age 72, unknown 49.5
1942 Male, age 51, unknown 48.3
2218 Male, age 76, both hemispheres 47.9
2021 Male, age 53, unknown 45.2
1915 Female, age 42, unknown 42.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.3
Samples: 139

Max nTPM: 26.6
Min nTPM: 3.9
Std nTPM: 3.8
Median nTPM: 9.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 26.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 22.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 22.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 21.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 21.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 20.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 16.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 15.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 15.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 194.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 194.1
FF:10158-103A5 76 years, female 194.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 36.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 31.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 27.4
Sample A Female 33.1
Sample B Female 27.4
Sample C Male 31.3
Sample D Male 33.5
Midbrain
nTPM: 36.6
Samples: 4

Max nTPM: 45.9
Min nTPM: 26.7
Sample A Female 45.9
Sample B Female 37.0
Sample C Male 36.6
Sample D Male 26.7
Periaqueductal gray
nTPM: 31.8
Samples: 3

Max nTPM: 34.0
Min nTPM: 29.9
Sample B Female 34.0
Sample C Male 29.9
Sample D Male 31.4
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 33.6
Min nTPM: 26.9
Sample A Female 31.8
Sample B Female 26.9
Sample C Male 29.7
Sample D Male 33.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.7
Samples: 4

Max nTPM: 32.0
Min nTPM: 25.7
Sample A Male 25.7
Sample B Male 29.5
Sample C Female 32.0
Sample D Female 31.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
74510236 Antisense, RP_060208_01_D04, Mouse strain C57BL/6J (56 days, male) 3.4

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