MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.9 nTPM
HPA Brain:128.9 nTPM
GTEx:26.9 nTPM
FANTOM5:156.4 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:8.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.6
2666 Male, age 74, left hemisphere 136.4
1830 Male, age 51, unknown 134.4
2019 Male, age 18, unknown 131.3
1833 Male, age 53, unknown 119.4
2828 Female, age 72, unknown 107.7
2411 Female, age 72, unknown 98.9
2219 Male, age 76, both hemispheres 98.2
1870 Female, age 42, unknown 93.6
1827 Male, age 72, unknown 84.7
2586 Male, age 75, left hemisphere 80.7
Dorsal raphe nucleus
nTPM: 109.0
2750 Male, age 76, both hemispheres 123.7
1828 Male, age 53, unknown 114.4
2016 Female, age 72, unknown 107.6
2047 Male, age 72, unknown 103.9
2298 Female, age 72, unknown 95.6
Inferior colliculus
nTPM: 82.8
1890 Male, age 53, unknown 95.1
1848 Female, age 42, unknown 82.4
2849 Male, age 72, unknown 81.3
2097 Female, age 72, unknown 72.7
Median raphe nucleus
nTPM: 94.8
2220 Male, age 76, midline 94.8
Periaquaductal grey, anterior
nTPM: 86.9
1795 Male, age 51, unknown 88.7
1947 Male, age 18, unknown 87.1
2502 Female, age 75, unknown 84.8
Periaquaductal grey, dorsal
nTPM: 107.6
2850 Male, age 76, both hemispheres 119.1
1831 Male, age 72, unknown 116.6
2464 Female, age 72, unknown 106.8
1840 Male, age 53, unknown 87.9
Periaquaductal grey, lateral
nTPM: 114.7
2272 Male, age 74, both hemispheres 122.8
2140 Male, age 76, both hemispheres 118.2
2053 Male, age 18, unknown 103.2
Pretectal area
nTPM: 95.0
2407 Male, age 75, both hemispheres 129.7
2316 Male, age 76, right hemisphere 123.7
1817 Female, age 42, unknown 100.7
2007 Male, age 72, unknown 100.6
2224 Female, age 72, unknown 92.5
2273 Male, age 74, both hemispheres 91.8
1815 Male, age 53, unknown 90.0
1944 Female, age 72, unknown 86.1
2667 Female, age 75, unknown 79.8
2825 Male, age 18, unknown 79.8
1816 Male, age 51, unknown 70.0
Red nucleus
nTPM: 122.8
2823 Male, age 76, right hemisphere 151.1
1865 Male, age 51, unknown 149.6
1904 Male, age 53, unknown 144.4
2227 Male, age 72, unknown 130.1
2769 Male, age 72, unknown 128.1
2584 Male, age 75, left hemisphere 115.3
2785 Male, age 18, unknown 115.0
2725 Female, age 75, unknown 111.1
1954 Female, age 42, unknown 110.4
1821 Female, age 72, unknown 109.1
2503 Female, age 72, unknown 105.8
2588 Male, age 74, left hemisphere 104.0
Substantia nigra
nTPM: 128.9
2699 Male, age 18, unknown 180.6
2665 Male, age 74, both hemispheres 175.3
2590 Female, age 75, unknown 150.5
2583 Male, age 75, right hemisphere 136.3
2409 Female, age 72, unknown 127.7
1851 Male, age 51, unknown 115.3
2241 Male, age 72, unknown 113.6
1916 Female, age 42, unknown 106.0
1941 Male, age 53, unknown 100.1
1889 Female, age 72, unknown 83.7
Superior colliculus
nTPM: 98.7
1913 Female, age 42, unknown 124.1
2587 Male, age 74, left hemisphere 120.5
1995 Male, age 72, unknown 109.0
2668 Female, age 75, unknown 106.7
2664 Male, age 75, both hemispheres 102.5
2087 Female, age 72, unknown 101.8
1839 Male, age 51, unknown 86.9
1796 Male, age 53, unknown 82.1
1895 Male, age 76, right hemisphere 78.3
2261 Male, age 18, unknown 75.3
Ventral tegmental area
nTPM: 115.9
2218 Male, age 76, both hemispheres 144.6
2021 Male, age 53, unknown 133.6
1942 Male, age 51, unknown 117.8
1915 Female, age 42, unknown 101.4
2410 Female, age 72, unknown 101.2
2223 Female, age 72, unknown 96.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.9
Samples: 139

Max nTPM: 85.6
Min nTPM: 4.8
Std nTPM: 14.0
Median nTPM: 22.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 85.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 69.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 61.4
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 60.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 59.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 58.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 55.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 54.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 54.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 53.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 53.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 156.4
FF:10158-103A5 76 years, female 156.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.8
Samples: 4

Max nTPM: 47.3
Min nTPM: 43.6
Sample A Female 47.3
Sample B Female 47.0
Sample C Male 43.6
Sample D Male 45.1
Midbrain
nTPM: 37.1
Samples: 4

Max nTPM: 54.8
Min nTPM: 26.2
Sample A Female 54.8
Sample B Female 39.4
Sample C Male 27.9
Sample D Male 26.2
Periaqueductal gray
nTPM: 35.0
Samples: 3

Max nTPM: 40.7
Min nTPM: 28.6
Sample B Female 35.8
Sample C Male 40.7
Sample D Male 28.6
Superior colliculi
nTPM: 34.0
Samples: 4

Max nTPM: 43.0
Min nTPM: 27.0
Sample A Female 43.0
Sample B Female 27.0
Sample C Male 32.3
Sample D Male 33.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 8.8
Min nTPM: 7.2
Sample A Male 8.8
Sample B Male 8.2
Sample C Female 7.2
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69874096 Antisense, RP_050512_02_F06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org