MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.5 nTPM
HPA Brain:30.6 nTPM
GTEx:30.5 nTPM
FANTOM5:96.3 Scaled Tags Per Million
Pig:31.7 nTPM
Mouse:21.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.4
2666 Male, age 74, left hemisphere 30.7
2219 Male, age 76, both hemispheres 29.2
1870 Female, age 42, unknown 27.6
1827 Male, age 72, unknown 27.5
2019 Male, age 18, unknown 26.2
1830 Male, age 51, unknown 25.9
2411 Female, age 72, unknown 25.1
1833 Male, age 53, unknown 24.3
2586 Male, age 75, left hemisphere 24.3
2828 Female, age 72, unknown 23.0
Dorsal raphe nucleus
nTPM: 21.4
2750 Male, age 76, both hemispheres 24.2
2016 Female, age 72, unknown 23.3
1828 Male, age 53, unknown 22.0
2047 Male, age 72, unknown 19.3
2298 Female, age 72, unknown 18.0
Inferior colliculus
nTPM: 26.1
2849 Male, age 72, unknown 27.5
1890 Male, age 53, unknown 26.7
2097 Female, age 72, unknown 25.2
1848 Female, age 42, unknown 24.9
Median raphe nucleus
nTPM: 24.2
2220 Male, age 76, midline 24.2
Periaquaductal grey, anterior
nTPM: 20.8
1947 Male, age 18, unknown 22.9
2502 Female, age 75, unknown 22.2
1795 Male, age 51, unknown 17.4
Periaquaductal grey, dorsal
nTPM: 24.1
1831 Male, age 72, unknown 25.7
2850 Male, age 76, both hemispheres 24.4
1840 Male, age 53, unknown 23.9
2464 Female, age 72, unknown 22.4
Periaquaductal grey, lateral
nTPM: 21.2
2140 Male, age 76, both hemispheres 23.1
2053 Male, age 18, unknown 21.7
2272 Male, age 74, both hemispheres 18.8
Pretectal area
nTPM: 23.1
1817 Female, age 42, unknown 28.5
1815 Male, age 53, unknown 27.6
2007 Male, age 72, unknown 26.8
1816 Male, age 51, unknown 25.3
1944 Female, age 72, unknown 24.9
2825 Male, age 18, unknown 22.7
2407 Male, age 75, both hemispheres 22.1
2224 Female, age 72, unknown 21.6
2316 Male, age 76, right hemisphere 20.2
2273 Male, age 74, both hemispheres 20.0
2667 Female, age 75, unknown 14.7
Red nucleus
nTPM: 30.6
1865 Male, age 51, unknown 37.6
2503 Female, age 72, unknown 36.1
2588 Male, age 74, left hemisphere 33.9
2725 Female, age 75, unknown 33.8
1821 Female, age 72, unknown 30.7
1954 Female, age 42, unknown 30.5
2785 Male, age 18, unknown 29.8
2227 Male, age 72, unknown 29.1
1904 Male, age 53, unknown 28.8
2584 Male, age 75, left hemisphere 26.9
2769 Male, age 72, unknown 26.6
2823 Male, age 76, right hemisphere 23.8
Substantia nigra
nTPM: 23.4
2699 Male, age 18, unknown 26.0
2583 Male, age 75, right hemisphere 25.2
2409 Female, age 72, unknown 24.2
1851 Male, age 51, unknown 24.1
2665 Male, age 74, both hemispheres 24.1
1916 Female, age 42, unknown 23.5
1889 Female, age 72, unknown 22.9
2241 Male, age 72, unknown 22.8
1941 Male, age 53, unknown 22.6
2590 Female, age 75, unknown 18.4
Superior colliculus
nTPM: 25.3
2668 Female, age 75, unknown 40.1
1895 Male, age 76, right hemisphere 28.0
2587 Male, age 74, left hemisphere 27.6
1913 Female, age 42, unknown 27.0
1995 Male, age 72, unknown 24.0
2664 Male, age 75, both hemispheres 22.7
1796 Male, age 53, unknown 22.2
2087 Female, age 72, unknown 20.8
1839 Male, age 51, unknown 20.5
2261 Male, age 18, unknown 20.1
Ventral tegmental area
nTPM: 23.9
2218 Male, age 76, both hemispheres 25.4
2021 Male, age 53, unknown 24.6
2223 Female, age 72, unknown 24.5
1942 Male, age 51, unknown 24.4
1915 Female, age 42, unknown 23.5
2410 Female, age 72, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.5
Samples: 139

Max nTPM: 72.1
Min nTPM: 16.2
Std nTPM: 9.0
Median nTPM: 28.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 72.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 58.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 50.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 50.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 49.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 48.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 48.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 45.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 45.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.3
FF:10158-103A5 76 years, female 96.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.1
Samples: 4

Max nTPM: 36.8
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 26.2
Sample C Male 32.0
Sample D Male 36.8
Midbrain
nTPM: 27.9
Samples: 4

Max nTPM: 31.5
Min nTPM: 23.1
Sample A Female 23.1
Sample B Female 25.6
Sample C Male 31.5
Sample D Male 31.4
Periaqueductal gray
nTPM: 31.7
Samples: 3

Max nTPM: 37.4
Min nTPM: 23.9
Sample B Female 23.9
Sample C Male 33.9
Sample D Male 37.4
Superior colliculi
nTPM: 28.5
Samples: 4

Max nTPM: 36.2
Min nTPM: 21.2
Sample A Female 21.6
Sample B Female 21.2
Sample C Male 35.1
Sample D Male 36.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 24.6
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 21.9
Sample C Female 24.6
Sample D Female 19.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
601192 Antisense, RP_040831_01_H12, Mouse strain C57BL/6J (56 days, male) 2.4
71892370 Antisense, RP_051012_01_F09, Mouse strain C57BL/6J (56 days, male) 0.0

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