MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.9 nTPM
HPA Brain:24.5 nTPM
GTEx:7.9 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:28.4 nTPM
Mouse:0.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.4
2666 Male, age 74, left hemisphere 29.4
2828 Female, age 72, unknown 15.4
1870 Female, age 42, unknown 13.7
1830 Male, age 51, unknown 13.6
1827 Male, age 72, unknown 13.5
2019 Male, age 18, unknown 10.5
1833 Male, age 53, unknown 10.0
2411 Female, age 72, unknown 8.8
2586 Male, age 75, left hemisphere 5.0
2219 Male, age 76, both hemispheres 4.2
Dorsal raphe nucleus
nTPM: 17.9
1828 Male, age 53, unknown 33.5
2016 Female, age 72, unknown 21.2
2298 Female, age 72, unknown 11.9
2047 Male, age 72, unknown 11.8
2750 Male, age 76, both hemispheres 11.2
Inferior colliculus
nTPM: 9.7
1848 Female, age 42, unknown 12.7
2097 Female, age 72, unknown 10.3
2849 Male, age 72, unknown 9.7
1890 Male, age 53, unknown 6.1
Median raphe nucleus
nTPM: 12.1
2220 Male, age 76, midline 12.1
Periaquaductal grey, anterior
nTPM: 24.5
2502 Female, age 75, unknown 34.1
1947 Male, age 18, unknown 23.4
1795 Male, age 51, unknown 16.1
Periaquaductal grey, dorsal
nTPM: 18.6
2850 Male, age 76, both hemispheres 32.6
1831 Male, age 72, unknown 18.3
2464 Female, age 72, unknown 14.2
1840 Male, age 53, unknown 9.1
Periaquaductal grey, lateral
nTPM: 23.1
2140 Male, age 76, both hemispheres 27.5
2272 Male, age 74, both hemispheres 22.4
2053 Male, age 18, unknown 19.5
Pretectal area
nTPM: 13.1
1815 Male, age 53, unknown 17.6
2316 Male, age 76, right hemisphere 17.3
2224 Female, age 72, unknown 16.4
2273 Male, age 74, both hemispheres 14.9
1817 Female, age 42, unknown 14.0
2825 Male, age 18, unknown 13.0
1944 Female, age 72, unknown 12.1
2667 Female, age 75, unknown 11.3
1816 Male, age 51, unknown 10.0
2007 Male, age 72, unknown 8.8
2407 Male, age 75, both hemispheres 8.5
Red nucleus
nTPM: 11.3
2503 Female, age 72, unknown 14.9
2227 Male, age 72, unknown 13.3
1821 Female, age 72, unknown 13.1
1954 Female, age 42, unknown 12.9
2769 Male, age 72, unknown 12.4
1865 Male, age 51, unknown 12.0
1904 Male, age 53, unknown 10.5
2785 Male, age 18, unknown 10.5
2725 Female, age 75, unknown 10.2
2823 Male, age 76, right hemisphere 9.5
2584 Male, age 75, left hemisphere 8.8
2588 Male, age 74, left hemisphere 7.1
Substantia nigra
nTPM: 12.1
2409 Female, age 72, unknown 16.8
2699 Male, age 18, unknown 16.7
2665 Male, age 74, both hemispheres 14.4
1851 Male, age 51, unknown 11.4
2590 Female, age 75, unknown 11.1
1941 Male, age 53, unknown 11.0
1889 Female, age 72, unknown 10.7
2241 Male, age 72, unknown 10.5
1916 Female, age 42, unknown 10.1
2583 Male, age 75, right hemisphere 8.2
Superior colliculus
nTPM: 11.8
1839 Male, age 51, unknown 16.4
2587 Male, age 74, left hemisphere 14.6
1995 Male, age 72, unknown 13.8
1913 Female, age 42, unknown 11.9
1796 Male, age 53, unknown 11.6
2664 Male, age 75, both hemispheres 10.9
2261 Male, age 18, unknown 10.4
2668 Female, age 75, unknown 10.2
2087 Female, age 72, unknown 9.5
1895 Male, age 76, right hemisphere 8.4
Ventral tegmental area
nTPM: 11.9
2218 Male, age 76, both hemispheres 14.9
2021 Male, age 53, unknown 13.7
2410 Female, age 72, unknown 12.0
1942 Male, age 51, unknown 11.9
1915 Female, age 42, unknown 11.5
2223 Female, age 72, unknown 7.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.9
Samples: 139

Max nTPM: 31.2
Min nTPM: 1.0
Std nTPM: 5.3
Median nTPM: 6.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 31.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 30.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 28.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 27.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 17.6
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 16.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 16.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 15.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.5
Samples: 4

Max nTPM: 35.7
Min nTPM: 20.9
Sample A Female 25.8
Sample B Female 35.7
Sample C Male 20.9
Sample D Male 31.4
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 26.1
Min nTPM: 15.1
Sample A Female 24.7
Sample B Female 26.1
Sample C Male 15.1
Sample D Male 24.1
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 29.4
Min nTPM: 22.7
Sample B Female 24.4
Sample C Male 22.7
Sample D Male 29.4
Superior colliculi
nTPM: 24.2
Samples: 4

Max nTPM: 30.7
Min nTPM: 16.5
Sample A Female 23.1
Sample B Female 30.7
Sample C Male 16.5
Sample D Male 26.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71723796 Antisense, RP_050915_04_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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