MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.7 nTPM
HPA Brain:32.6 nTPM
GTEx:42.7 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:24.3 nTPM
Mouse:13.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.4
1870 Female, age 42, unknown 30.7
1833 Male, age 53, unknown 29.2
1827 Male, age 72, unknown 28.2
2411 Female, age 72, unknown 28.2
1830 Male, age 51, unknown 28.0
2828 Female, age 72, unknown 25.3
2586 Male, age 75, left hemisphere 21.1
2219 Male, age 76, both hemispheres 19.6
2019 Male, age 18, unknown 17.9
2666 Male, age 74, left hemisphere 16.0
Dorsal raphe nucleus
nTPM: 29.5
2298 Female, age 72, unknown 35.2
2047 Male, age 72, unknown 30.0
2750 Male, age 76, both hemispheres 29.3
2016 Female, age 72, unknown 28.8
1828 Male, age 53, unknown 24.0
Inferior colliculus
nTPM: 25.5
2097 Female, age 72, unknown 29.5
2849 Male, age 72, unknown 24.6
1848 Female, age 42, unknown 24.0
1890 Male, age 53, unknown 23.9
Median raphe nucleus
nTPM: 24.3
2220 Male, age 76, midline 24.3
Periaquaductal grey, anterior
nTPM: 28.3
1947 Male, age 18, unknown 34.9
1795 Male, age 51, unknown 27.0
2502 Female, age 75, unknown 23.1
Periaquaductal grey, dorsal
nTPM: 24.8
1840 Male, age 53, unknown 27.4
2850 Male, age 76, both hemispheres 27.4
1831 Male, age 72, unknown 23.4
2464 Female, age 72, unknown 20.9
Periaquaductal grey, lateral
nTPM: 32.6
2272 Male, age 74, both hemispheres 35.9
2053 Male, age 18, unknown 35.3
2140 Male, age 76, both hemispheres 26.6
Pretectal area
nTPM: 26.7
2224 Female, age 72, unknown 35.4
2273 Male, age 74, both hemispheres 31.4
2825 Male, age 18, unknown 29.7
1815 Male, age 53, unknown 27.2
1816 Male, age 51, unknown 26.5
1817 Female, age 42, unknown 25.9
2007 Male, age 72, unknown 25.8
2407 Male, age 75, both hemispheres 24.0
1944 Female, age 72, unknown 23.0
2316 Male, age 76, right hemisphere 22.6
2667 Female, age 75, unknown 21.7
Red nucleus
nTPM: 24.3
2725 Female, age 75, unknown 33.8
2503 Female, age 72, unknown 30.1
1821 Female, age 72, unknown 25.8
2823 Male, age 76, right hemisphere 25.7
2588 Male, age 74, left hemisphere 24.2
2769 Male, age 72, unknown 23.5
1954 Female, age 42, unknown 22.8
1865 Male, age 51, unknown 21.6
2785 Male, age 18, unknown 21.6
2584 Male, age 75, left hemisphere 21.3
2227 Male, age 72, unknown 20.7
1904 Male, age 53, unknown 20.4
Substantia nigra
nTPM: 23.9
1851 Male, age 51, unknown 27.7
1941 Male, age 53, unknown 26.0
2241 Male, age 72, unknown 25.5
2590 Female, age 75, unknown 24.4
1889 Female, age 72, unknown 24.2
1916 Female, age 42, unknown 23.9
2699 Male, age 18, unknown 23.5
2583 Male, age 75, right hemisphere 21.9
2665 Male, age 74, both hemispheres 21.3
2409 Female, age 72, unknown 20.1
Superior colliculus
nTPM: 25.0
1895 Male, age 76, right hemisphere 27.5
2087 Female, age 72, unknown 27.0
2587 Male, age 74, left hemisphere 26.7
1913 Female, age 42, unknown 26.5
2668 Female, age 75, unknown 25.4
1995 Male, age 72, unknown 25.3
1796 Male, age 53, unknown 24.9
2261 Male, age 18, unknown 24.2
1839 Male, age 51, unknown 23.3
2664 Male, age 75, both hemispheres 19.7
Ventral tegmental area
nTPM: 25.6
2410 Female, age 72, unknown 28.3
2223 Female, age 72, unknown 26.9
2218 Male, age 76, both hemispheres 26.8
2021 Male, age 53, unknown 25.3
1915 Female, age 42, unknown 23.2
1942 Male, age 51, unknown 22.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 42.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.7
Samples: 139

Max nTPM: 89.8
Min nTPM: 27.2
Std nTPM: 10.5
Median nTPM: 39.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 89.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 86.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 83.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 74.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 67.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 64.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 59.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 58.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 55.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 55.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 28.9
Min nTPM: 20.2
Sample A Female 28.9
Sample B Female 21.3
Sample C Male 20.2
Sample D Male 23.1
Midbrain
nTPM: 24.3
Samples: 4

Max nTPM: 29.8
Min nTPM: 18.8
Sample A Female 29.8
Sample B Female 27.9
Sample C Male 18.8
Sample D Male 20.6
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 24.8
Min nTPM: 21.4
Sample B Female 21.4
Sample C Male 24.2
Sample D Male 24.8
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 25.1
Min nTPM: 19.9
Sample A Female 25.1
Sample B Female 19.9
Sample C Male 20.9
Sample D Male 21.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.5
Samples: 4

Max nTPM: 15.1
Min nTPM: 11.0
Sample A Male 11.0
Sample B Male 13.9
Sample C Female 13.8
Sample D Female 15.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
74821968 Antisense, RP_060321_02_F06, Mouse strain C57BL/6J (56 days, male) 0.3

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