MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.4 nTPM
HPA Brain:46.5 nTPM
GTEx:40.4 nTPM
FANTOM5:45.6 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:69.1 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
2411 Female, age 72, unknown 48.6
2019 Male, age 18, unknown 46.3
1827 Male, age 72, unknown 44.3
1870 Female, age 42, unknown 39.2
2219 Male, age 76, both hemispheres 39.2
1833 Male, age 53, unknown 38.2
1830 Male, age 51, unknown 36.7
2586 Male, age 75, left hemisphere 32.8
2828 Female, age 72, unknown 31.3
2666 Male, age 74, left hemisphere 30.5
Dorsal raphe nucleus
nTPM: 42.3
2298 Female, age 72, unknown 56.9
2750 Male, age 76, both hemispheres 42.8
2047 Male, age 72, unknown 39.3
1828 Male, age 53, unknown 38.5
2016 Female, age 72, unknown 33.7
Inferior colliculus
nTPM: 41.8
2097 Female, age 72, unknown 48.4
1848 Female, age 42, unknown 42.0
1890 Male, age 53, unknown 40.0
2849 Male, age 72, unknown 36.7
Median raphe nucleus
nTPM: 44.3
2220 Male, age 76, midline 44.3
Periaquaductal grey, anterior
nTPM: 42.8
1947 Male, age 18, unknown 44.9
2502 Female, age 75, unknown 42.5
1795 Male, age 51, unknown 40.9
Periaquaductal grey, dorsal
nTPM: 37.2
1840 Male, age 53, unknown 42.4
1831 Male, age 72, unknown 36.0
2464 Female, age 72, unknown 35.2
2850 Male, age 76, both hemispheres 35.1
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 42.4
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 30.5
Pretectal area
nTPM: 46.0
1816 Male, age 51, unknown 58.8
1944 Female, age 72, unknown 55.5
1817 Female, age 42, unknown 52.5
2007 Male, age 72, unknown 52.4
1815 Male, age 53, unknown 46.9
2224 Female, age 72, unknown 46.9
2273 Male, age 74, both hemispheres 46.1
2667 Female, age 75, unknown 41.9
2825 Male, age 18, unknown 36.6
2407 Male, age 75, both hemispheres 36.4
2316 Male, age 76, right hemisphere 32.0
Red nucleus
nTPM: 36.0
1821 Female, age 72, unknown 44.6
2785 Male, age 18, unknown 40.8
2584 Male, age 75, left hemisphere 40.1
1865 Male, age 51, unknown 35.9
2725 Female, age 75, unknown 35.1
2503 Female, age 72, unknown 34.8
1904 Male, age 53, unknown 34.7
1954 Female, age 42, unknown 34.2
2823 Male, age 76, right hemisphere 34.1
2588 Male, age 74, left hemisphere 33.4
2769 Male, age 72, unknown 32.4
2227 Male, age 72, unknown 31.3
Substantia nigra
nTPM: 46.5
2241 Male, age 72, unknown 61.1
1889 Female, age 72, unknown 52.6
2409 Female, age 72, unknown 49.1
1941 Male, age 53, unknown 48.9
1916 Female, age 42, unknown 47.9
2590 Female, age 75, unknown 45.7
1851 Male, age 51, unknown 45.5
2665 Male, age 74, both hemispheres 43.2
2583 Male, age 75, right hemisphere 37.9
2699 Male, age 18, unknown 33.4
Superior colliculus
nTPM: 40.1
2587 Male, age 74, left hemisphere 46.6
2261 Male, age 18, unknown 45.5
2087 Female, age 72, unknown 44.4
2668 Female, age 75, unknown 44.4
1796 Male, age 53, unknown 40.3
1895 Male, age 76, right hemisphere 38.6
1839 Male, age 51, unknown 37.6
1913 Female, age 42, unknown 35.7
1995 Male, age 72, unknown 34.6
2664 Male, age 75, both hemispheres 33.4
Ventral tegmental area
nTPM: 42.6
2410 Female, age 72, unknown 51.9
2223 Female, age 72, unknown 43.0
2218 Male, age 76, both hemispheres 42.2
1915 Female, age 42, unknown 42.0
2021 Male, age 53, unknown 38.6
1942 Male, age 51, unknown 37.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.4
Samples: 139

Max nTPM: 108.6
Min nTPM: 20.5
Std nTPM: 11.2
Median nTPM: 38.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 108.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 80.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 76.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 67.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 62.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 55.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 55.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 54.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.6
FF:10158-103A5 76 years, female 45.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.5
Samples: 4

Max nTPM: 51.2
Min nTPM: 22.1
Sample A Female 49.6
Sample B Female 26.9
Sample C Male 51.2
Sample D Male 22.1
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 63.4
Min nTPM: 29.4
Sample A Female 31.2
Sample B Female 29.4
Sample C Male 63.4
Sample D Male 40.4
Periaqueductal gray
nTPM: 30.1
Samples: 3

Max nTPM: 37.4
Min nTPM: 26.1
Sample B Female 26.7
Sample C Male 37.4
Sample D Male 26.1
Superior colliculi
nTPM: 45.9
Samples: 4

Max nTPM: 70.3
Min nTPM: 32.2
Sample A Female 42.9
Sample B Female 32.2
Sample C Male 70.3
Sample D Male 38.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 69.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 69.1
Samples: 4

Max nTPM: 70.2
Min nTPM: 67.0
Sample A Male 69.6
Sample B Male 70.2
Sample C Female 67.0
Sample D Female 69.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
71608294 Antisense, RP_050927_01_D09, Mouse strain C57BL/6J (56 days, male) 10.6
293038 Antisense, RP_040609_01_F01, Mouse strain C57BL/6J (56 days, male) 6.7

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