MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.7 nTPM
HPA Brain:34.1 nTPM
GTEx:19.7 nTPM
FANTOM5:129.3 Scaled Tags Per Million
Pig:47.6 nTPM
Mouse:26.8 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
2411 Female, age 72, unknown 39.7
1870 Female, age 42, unknown 38.0
1830 Male, age 51, unknown 35.3
2019 Male, age 18, unknown 32.8
1833 Male, age 53, unknown 31.6
1827 Male, age 72, unknown 26.5
2586 Male, age 75, left hemisphere 26.1
2666 Male, age 74, left hemisphere 25.4
2219 Male, age 76, both hemispheres 23.2
2828 Female, age 72, unknown 23.1
Dorsal raphe nucleus
nTPM: 28.6
2750 Male, age 76, both hemispheres 35.9
2016 Female, age 72, unknown 28.8
1828 Male, age 53, unknown 26.9
2047 Male, age 72, unknown 26.3
2298 Female, age 72, unknown 25.3
Inferior colliculus
nTPM: 27.7
2097 Female, age 72, unknown 30.0
1890 Male, age 53, unknown 28.1
1848 Female, age 42, unknown 28.0
2849 Male, age 72, unknown 24.5
Median raphe nucleus
nTPM: 31.8
2220 Male, age 76, midline 31.8
Periaquaductal grey, anterior
nTPM: 26.7
2502 Female, age 75, unknown 30.7
1947 Male, age 18, unknown 28.7
1795 Male, age 51, unknown 20.8
Periaquaductal grey, dorsal
nTPM: 26.4
2464 Female, age 72, unknown 27.8
2850 Male, age 76, both hemispheres 26.8
1831 Male, age 72, unknown 26.1
1840 Male, age 53, unknown 24.9
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 28.5
2140 Male, age 76, both hemispheres 27.0
2272 Male, age 74, both hemispheres 24.7
Pretectal area
nTPM: 28.6
2667 Female, age 75, unknown 33.8
1817 Female, age 42, unknown 31.7
2007 Male, age 72, unknown 31.3
1815 Male, age 53, unknown 30.3
2273 Male, age 74, both hemispheres 30.1
2316 Male, age 76, right hemisphere 28.6
2224 Female, age 72, unknown 27.2
2825 Male, age 18, unknown 26.7
1816 Male, age 51, unknown 26.1
2407 Male, age 75, both hemispheres 24.9
1944 Female, age 72, unknown 24.0
Red nucleus
nTPM: 34.1
1821 Female, age 72, unknown 44.1
1904 Male, age 53, unknown 43.8
1865 Male, age 51, unknown 39.3
2769 Male, age 72, unknown 35.0
2785 Male, age 18, unknown 34.7
2227 Male, age 72, unknown 34.0
1954 Female, age 42, unknown 33.7
2823 Male, age 76, right hemisphere 32.2
2503 Female, age 72, unknown 31.2
2588 Male, age 74, left hemisphere 28.3
2725 Female, age 75, unknown 26.9
2584 Male, age 75, left hemisphere 26.3
Substantia nigra
nTPM: 28.1
1889 Female, age 72, unknown 34.1
2409 Female, age 72, unknown 34.1
2241 Male, age 72, unknown 30.5
2583 Male, age 75, right hemisphere 30.3
1851 Male, age 51, unknown 28.5
1916 Female, age 42, unknown 26.1
1941 Male, age 53, unknown 26.0
2590 Female, age 75, unknown 25.3
2699 Male, age 18, unknown 23.8
2665 Male, age 74, both hemispheres 22.4
Superior colliculus
nTPM: 29.5
1913 Female, age 42, unknown 36.6
1895 Male, age 76, right hemisphere 31.9
1995 Male, age 72, unknown 31.8
1839 Male, age 51, unknown 31.2
2587 Male, age 74, left hemisphere 30.5
2668 Female, age 75, unknown 29.3
2261 Male, age 18, unknown 27.6
1796 Male, age 53, unknown 26.1
2087 Female, age 72, unknown 25.9
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 30.7
2410 Female, age 72, unknown 36.2
2223 Female, age 72, unknown 34.4
2218 Male, age 76, both hemispheres 30.1
1915 Female, age 42, unknown 28.4
1942 Male, age 51, unknown 27.9
2021 Male, age 53, unknown 27.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.7
Samples: 139

Max nTPM: 44.5
Min nTPM: 9.6
Std nTPM: 6.4
Median nTPM: 18.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 40.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 38.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 37.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 34.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 31.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 30.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.3
FF:10158-103A5 76 years, female 129.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 47.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.4
Samples: 4

Max nTPM: 43.9
Min nTPM: 37.3
Sample A Female 43.9
Sample B Female 38.1
Sample C Male 37.3
Sample D Male 42.2
Midbrain
nTPM: 47.7
Samples: 4

Max nTPM: 57.3
Min nTPM: 42.1
Sample A Female 57.3
Sample B Female 43.9
Sample C Male 47.3
Sample D Male 42.1
Periaqueductal gray
nTPM: 36.6
Samples: 3

Max nTPM: 38.4
Min nTPM: 35.2
Sample B Female 38.4
Sample C Male 35.2
Sample D Male 36.1
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 46.8
Min nTPM: 40.4
Sample A Female 46.8
Sample B Female 40.4
Sample C Male 45.2
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 26.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 25.3
Sample A Male 25.3
Sample B Male 26.9
Sample C Female 27.6
Sample D Female 27.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
74990491 Antisense, RP_060410_01_B01, Mouse strain C57BL/6J (56 days, male) 1.2

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