MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:46.3 nTPM
HPA Brain:93.6 nTPM
GTEx:46.3 nTPM
FANTOM5:83.4 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:49.4 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.6
1833 Male, age 53, unknown 79.7
1830 Male, age 51, unknown 77.6
2666 Male, age 74, left hemisphere 75.1
2019 Male, age 18, unknown 74.9
1827 Male, age 72, unknown 72.7
1870 Female, age 42, unknown 72.7
2411 Female, age 72, unknown 67.9
2828 Female, age 72, unknown 66.6
2219 Male, age 76, both hemispheres 65.9
2586 Male, age 75, left hemisphere 53.0
Dorsal raphe nucleus
nTPM: 69.7
2750 Male, age 76, both hemispheres 75.0
1828 Male, age 53, unknown 72.8
2047 Male, age 72, unknown 70.9
2016 Female, age 72, unknown 67.8
2298 Female, age 72, unknown 62.3
Inferior colliculus
nTPM: 73.3
2849 Male, age 72, unknown 78.4
2097 Female, age 72, unknown 72.0
1890 Male, age 53, unknown 71.7
1848 Female, age 42, unknown 71.1
Median raphe nucleus
nTPM: 93.6
2220 Male, age 76, midline 93.6
Periaquaductal grey, anterior
nTPM: 62.9
1947 Male, age 18, unknown 64.3
2502 Female, age 75, unknown 64.2
1795 Male, age 51, unknown 60.1
Periaquaductal grey, dorsal
nTPM: 74.8
2850 Male, age 76, both hemispheres 96.3
1831 Male, age 72, unknown 71.0
2464 Female, age 72, unknown 68.6
1840 Male, age 53, unknown 63.1
Periaquaductal grey, lateral
nTPM: 76.2
2140 Male, age 76, both hemispheres 81.8
2272 Male, age 74, both hemispheres 75.5
2053 Male, age 18, unknown 71.4
Pretectal area
nTPM: 76.5
1817 Female, age 42, unknown 86.3
2667 Female, age 75, unknown 79.5
1816 Male, age 51, unknown 79.4
2007 Male, age 72, unknown 78.0
1815 Male, age 53, unknown 77.9
1944 Female, age 72, unknown 76.5
2224 Female, age 72, unknown 73.9
2407 Male, age 75, both hemispheres 73.8
2316 Male, age 76, right hemisphere 72.7
2825 Male, age 18, unknown 72.4
2273 Male, age 74, both hemispheres 71.1
Red nucleus
nTPM: 74.2
2725 Female, age 75, unknown 79.9
2823 Male, age 76, right hemisphere 79.2
1865 Male, age 51, unknown 78.9
2785 Male, age 18, unknown 78.8
1821 Female, age 72, unknown 76.5
1904 Male, age 53, unknown 75.1
2584 Male, age 75, left hemisphere 75.0
1954 Female, age 42, unknown 74.0
2503 Female, age 72, unknown 72.0
2227 Male, age 72, unknown 68.1
2769 Male, age 72, unknown 66.9
2588 Male, age 74, left hemisphere 65.5
Substantia nigra
nTPM: 83.6
2409 Female, age 72, unknown 92.0
2241 Male, age 72, unknown 89.2
1916 Female, age 42, unknown 89.0
1941 Male, age 53, unknown 88.4
2699 Male, age 18, unknown 86.3
2665 Male, age 74, both hemispheres 81.5
1851 Male, age 51, unknown 81.2
1889 Female, age 72, unknown 79.6
2590 Female, age 75, unknown 74.1
2583 Male, age 75, right hemisphere 74.0
Superior colliculus
nTPM: 70.9
1913 Female, age 42, unknown 80.6
2087 Female, age 72, unknown 76.7
1895 Male, age 76, right hemisphere 75.2
2587 Male, age 74, left hemisphere 74.7
1995 Male, age 72, unknown 71.5
1796 Male, age 53, unknown 71.4
2668 Female, age 75, unknown 69.2
1839 Male, age 51, unknown 66.1
2261 Male, age 18, unknown 66.0
2664 Male, age 75, both hemispheres 57.9
Ventral tegmental area
nTPM: 76.7
2218 Male, age 76, both hemispheres 86.9
2410 Female, age 72, unknown 80.6
2223 Female, age 72, unknown 77.4
1915 Female, age 42, unknown 74.7
1942 Male, age 51, unknown 71.6
2021 Male, age 53, unknown 69.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.3
Samples: 139

Max nTPM: 82.0
Min nTPM: 34.5
Std nTPM: 7.7
Median nTPM: 45.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 82.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 73.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 71.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 67.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 64.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 64.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 64.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 60.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 59.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 57.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 56.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.4
FF:10158-103A5 76 years, female 83.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.4
Samples: 4

Max nTPM: 60.6
Min nTPM: 56.8
Sample A Female 60.6
Sample B Female 56.8
Sample C Male 57.1
Sample D Male 59.2
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 68.8
Min nTPM: 49.5
Sample A Female 68.8
Sample B Female 49.5
Sample C Male 58.4
Sample D Male 53.1
Periaqueductal gray
nTPM: 47.2
Samples: 3

Max nTPM: 49.6
Min nTPM: 46.0
Sample B Female 46.0
Sample C Male 49.6
Sample D Male 46.1
Superior colliculi
nTPM: 58.3
Samples: 4

Max nTPM: 61.3
Min nTPM: 56.1
Sample A Female 59.4
Sample B Female 61.3
Sample C Male 56.1
Sample D Male 56.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.4
Samples: 4

Max nTPM: 53.7
Min nTPM: 47.2
Sample A Male 47.6
Sample B Male 47.2
Sample C Female 49.2
Sample D Female 53.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
76003605 Antisense, RP_060608_02_G12, Mouse strain C57BL/6J (56 days, male) 0.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org