HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:10.4 nTPM
HPA Brain:68.0 nTPM
GTEx:10.4 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:23.6 nTPM
Mouse:25.5 nTPM
Allen mouse:2.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051178
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 68.0
Sample id Sample description nTPM
Hippocampus
nTPM: 24.0
2148 Female, age 91, left hemisphere 31.2
2621 Female, age 67, right hemisphere 27.6
1911 Female, age 85, right hemisphere 27.2
2529 Female, age 94, left hemisphere 24.3
1855 Male, age 76, left hemisphere 17.9
1898 Male, age 80, left hemisphere 15.7
Dentate gyrus
nTPM: 22.7
1927 Female, age 91, both hemispheres 32.9
2531 Female, age 67, both hemispheres 30.3
2246 Female, age 85, both hemispheres 27.4
2528 Male, age 74, both hemispheres 21.1
2010 Male, age 76, both hemispheres 13.5
2530 Female, age 94, left hemisphere 11.1
Entorhinal gyrus
nTPM: 64.5
2613 Female, age 94, left hemisphere 111.6
2686 Male, age 75, right hemisphere 68.9
1938 Female, age 85, left hemisphere 65.9
2764 Male, age 80, right hemisphere 62.5
1787 Male, age 76, left hemisphere 47.4
2117 Female, age 91, right hemisphere 30.7
Hippocampus, CA1
nTPM: 29.4
2082 Female, age 91, right hemisphere 36.6
2527 Male, age 74, both hemispheres 32.9
2045 Male, age 76, both hemispheres 31.9
2749 Male, age 80, left hemisphere 30.8
1873 Female, age 85, both hemispheres 14.8
Hippocampus, CA2
nTPM: 28.1
1940 Female, age 85, left hemisphere 49.8
2113 Female, age 91, right hemisphere 35.6
2437 Female, age 94, left hemisphere 25.3
1892 Male, age 76, both hemispheres 23.0
2249 Male, age 74, both hemispheres 22.1
1963 Male, age 80, left hemisphere 12.7
Hippocampus, CA3
nTPM: 27.3
2137 Male, age 80, left hemisphere 37.8
1867 Male, age 76, both hemispheres 28.4
2861 Female, age 67, both hemispheres 26.0
2620 Female, age 94, left hemisphere 24.9
1891 Female, age 85, both hemispheres 23.6
2436 Male, age 74, both hemispheres 23.3
Parahippocampal cortex
nTPM: 55.8
2692 Male, age 74, both hemispheres 68.0
1933 Female, age 85, both hemispheres 67.0
2693 Female, age 94, both hemispheres 65.9
2622 Female, age 67, right hemisphere 64.0
1850 Male, age 80, both hemispheres 63.6
2245 Female, age 91, both hemispheres 57.3
1990 Female, age 91, right hemisphere 54.5
2532 Female, age 72, left hemisphere 44.0
2250 Female, age 67, right hemisphere 43.7
2018 Male, age 76, both hemispheres 30.0
Perirhinal gyrus
nTPM: 68.0
1847 Female, age 91, left hemisphere 94.8
2521 Female, age 94, right hemisphere 70.2
1794 Male, age 80, right hemisphere 61.8
1841 Female, age 85, right hemisphere 59.8
2848 Male, age 76, right hemisphere 53.7
Subiculum
nTPM: 31.6
1977 Female, age 85, both hemispheres 52.8
2619 Male, age 74, both hemispheres 48.1
2438 Female, age 94, left hemisphere 25.8
1901 Male, age 80, both hemispheres 24.6
2729 Female, age 91, right hemisphere 19.9
2042 Male, age 76, both hemispheres 18.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 10.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 10.4
Samples: 197

Max nTPM: 71.6
Min nTPM: 0.2
Std nTPM: 10.5
Median nTPM: 7.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 71.6
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 49.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 44.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 43.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 42.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 41.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 39.5
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 36.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 36.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 34.4
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 34.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 0.0
FF:10169-103B7 60 years, female 0.0
FF:10153-102I9 76 years, female 0.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 23.6
Pig sample Sample description nTPM
Subiculum
nTPM: 22.8
Samples: 4

Max nTPM: 27.2
Min nTPM: 15.8
Sample A Female 27.2
Sample B Female 15.8
Sample C Male 26.3
Sample D Male 21.9
Dorsal hippocampus
nTPM: 3.8
Samples: 4

Max nTPM: 10.6
Min nTPM: 1.2
Sample A Female 1.3
Sample B Female 1.9
Sample C Male 10.6
Sample D Male 1.2
Entorhinal cortex
nTPM: 23.6
Samples: 4

Max nTPM: 28.5
Min nTPM: 18.4
Sample A Female 28.5
Sample B Female 18.4
Sample C Male 27.3
Sample D Male 20.1
Ventral hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 19.3
Min nTPM: 1.6
Sample A Female 6.9
Sample B Female 9.9
Sample C Male 19.3
Sample D Male 1.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 23.4
Samples: 4

Max nTPM: 27.4
Min nTPM: 20.6
Sample A Male 21.9
Sample B Male 20.6
Sample C Female 23.6
Sample D Female 27.4
Hippocampal formation
nTPM: 25.5
Samples: 4

Max nTPM: 27.5
Min nTPM: 23.3
Sample A Male 23.3
Sample B Male 27.5
Sample C Female 26.6
Sample D Female 24.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.0
69201642 Antisense, RP_050324_03_A02, Mouse strain C57BL/6J (56 days, male) 2.8
72340125 Antisense, RP_051101_02_A05, Mouse strain C57BL/6J (56 days, male) 1.3

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