HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:9.4 nTPM
HPA Brain:63.1 nTPM
GTEx:9.4 nTPM
FANTOM5:66.7 Scaled Tags Per Million
Pig:40.9 nTPM
Mouse:94.3 nTPM
Allen mouse:14.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA010712Antibody HPA029407
Glial cells Not detectedLow
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 63.1
Sample id Sample description nTPM
Hippocampus
nTPM: 45.8
1898 Male, age 80, left hemisphere 51.9
2621 Female, age 67, right hemisphere 49.8
2529 Female, age 94, left hemisphere 47.4
1911 Female, age 85, right hemisphere 44.8
1855 Male, age 76, left hemisphere 41.2
2148 Female, age 91, left hemisphere 39.6
Dentate gyrus
nTPM: 48.0
2010 Male, age 76, both hemispheres 54.6
1927 Female, age 91, both hemispheres 52.5
2530 Female, age 94, left hemisphere 50.3
2528 Male, age 74, both hemispheres 46.4
2246 Female, age 85, both hemispheres 42.5
2531 Female, age 67, both hemispheres 41.8
Entorhinal gyrus
nTPM: 55.3
2764 Male, age 80, right hemisphere 71.5
1938 Female, age 85, left hemisphere 58.9
1787 Male, age 76, left hemisphere 55.2
2613 Female, age 94, left hemisphere 52.2
2117 Female, age 91, right hemisphere 48.1
2686 Male, age 75, right hemisphere 45.8
Hippocampus, CA1
nTPM: 53.4
2749 Male, age 80, left hemisphere 70.1
2045 Male, age 76, both hemispheres 56.7
2527 Male, age 74, both hemispheres 47.7
2082 Female, age 91, right hemisphere 46.7
1873 Female, age 85, both hemispheres 46.0
Hippocampus, CA2
nTPM: 48.7
1940 Female, age 85, left hemisphere 53.2
1892 Male, age 76, both hemispheres 51.9
2249 Male, age 74, both hemispheres 51.9
1963 Male, age 80, left hemisphere 48.2
2113 Female, age 91, right hemisphere 46.0
2437 Female, age 94, left hemisphere 40.9
Hippocampus, CA3
nTPM: 48.6
2137 Male, age 80, left hemisphere 54.6
2620 Female, age 94, left hemisphere 52.5
1867 Male, age 76, both hemispheres 52.1
2436 Male, age 74, both hemispheres 47.4
1891 Female, age 85, both hemispheres 45.2
2861 Female, age 67, both hemispheres 40.0
Parahippocampal cortex
nTPM: 52.2
1850 Male, age 80, both hemispheres 59.2
1990 Female, age 91, right hemisphere 58.0
1933 Female, age 85, both hemispheres 57.3
2245 Female, age 91, both hemispheres 54.9
2693 Female, age 94, both hemispheres 53.9
2250 Female, age 67, right hemisphere 53.5
2018 Male, age 76, both hemispheres 53.3
2532 Female, age 72, left hemisphere 48.9
2692 Male, age 74, both hemispheres 43.3
2622 Female, age 67, right hemisphere 39.6
Perirhinal gyrus
nTPM: 63.1
1794 Male, age 80, right hemisphere 69.2
1847 Female, age 91, left hemisphere 69.2
1841 Female, age 85, right hemisphere 62.4
2521 Female, age 94, right hemisphere 58.8
2848 Male, age 76, right hemisphere 56.1
Subiculum
nTPM: 47.1
1977 Female, age 85, both hemispheres 56.0
2042 Male, age 76, both hemispheres 53.7
1901 Male, age 80, both hemispheres 48.3
2619 Male, age 74, both hemispheres 46.7
2438 Female, age 94, left hemisphere 39.7
2729 Female, age 91, right hemisphere 38.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.4
Samples: 197

Max nTPM: 22.8
Min nTPM: 4.2
Std nTPM: 2.6
Median nTPM: 9.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 22.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 17.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 16.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 16.4
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 16.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 15.5
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 15.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 15.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 14.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 13.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 13.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.7
FF:10169-103B7 60 years, female 68.5
FF:10153-102I9 76 years, female 64.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.9
Pig sample Sample description nTPM
Subiculum
nTPM: 41.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 37.8
Sample A Female 45.5
Sample B Female 39.0
Sample C Male 41.5
Sample D Male 37.8
Dorsal hippocampus
nTPM: 32.6
Samples: 4

Max nTPM: 41.4
Min nTPM: 24.0
Sample A Female 33.3
Sample B Female 31.6
Sample C Male 41.4
Sample D Male 24.0
Entorhinal cortex
nTPM: 34.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 29.6
Sample A Female 29.6
Sample B Female 33.8
Sample C Male 39.0
Sample D Male 33.8
Ventral hippocampus
nTPM: 32.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 31.6
Sample A Female 34.0
Sample B Female 31.6
Sample C Male 33.0
Sample D Male 32.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 94.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 94.3
Samples: 4

Max nTPM: 100.0
Min nTPM: 88.6
Sample A Male 94.0
Sample B Male 100.0
Sample C Female 88.6
Sample D Female 94.4
Hippocampal formation
nTPM: 91.5
Samples: 4

Max nTPM: 98.0
Min nTPM: 83.8
Sample A Male 87.0
Sample B Male 97.2
Sample C Female 98.0
Sample D Female 83.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.4
69672168 Antisense, RP_050428_03_B07, Mouse strain C57BL/6J (56 days, male) 14.4

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