MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:26.6 nTPM
GTEx:26.4 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:75.3 nTPM
Mouse:183.8 nTPM
Allen mouse:11.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.7
2019 Male, age 18, unknown 29.3
2411 Female, age 72, unknown 24.4
2219 Male, age 76, both hemispheres 24.2
2666 Male, age 74, left hemisphere 24.0
1827 Male, age 72, unknown 23.4
1830 Male, age 51, unknown 21.5
2586 Male, age 75, left hemisphere 20.3
2828 Female, age 72, unknown 20.1
1833 Male, age 53, unknown 20.0
1870 Female, age 42, unknown 20.0
Dorsal raphe nucleus
nTPM: 24.0
1828 Male, age 53, unknown 26.9
2298 Female, age 72, unknown 23.7
2750 Male, age 76, both hemispheres 23.5
2047 Male, age 72, unknown 23.4
2016 Female, age 72, unknown 22.3
Inferior colliculus
nTPM: 23.4
2097 Female, age 72, unknown 26.1
1890 Male, age 53, unknown 25.6
1848 Female, age 42, unknown 23.7
2849 Male, age 72, unknown 18.2
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 24.5
1947 Male, age 18, unknown 27.6
1795 Male, age 51, unknown 23.0
2502 Female, age 75, unknown 22.9
Periaquaductal grey, dorsal
nTPM: 20.9
2464 Female, age 72, unknown 23.2
1840 Male, age 53, unknown 22.0
1831 Male, age 72, unknown 21.0
2850 Male, age 76, both hemispheres 17.2
Periaquaductal grey, lateral
nTPM: 20.4
2272 Male, age 74, both hemispheres 22.6
2140 Male, age 76, both hemispheres 19.5
2053 Male, age 18, unknown 19.2
Pretectal area
nTPM: 26.6
2007 Male, age 72, unknown 36.4
1944 Female, age 72, unknown 30.6
2667 Female, age 75, unknown 29.2
1817 Female, age 42, unknown 27.2
1816 Male, age 51, unknown 27.0
1815 Male, age 53, unknown 25.6
2407 Male, age 75, both hemispheres 24.1
2273 Male, age 74, both hemispheres 24.0
2316 Male, age 76, right hemisphere 24.0
2224 Female, age 72, unknown 23.1
2825 Male, age 18, unknown 21.0
Red nucleus
nTPM: 25.1
2785 Male, age 18, unknown 28.8
1821 Female, age 72, unknown 28.0
2823 Male, age 76, right hemisphere 27.4
1904 Male, age 53, unknown 25.4
2503 Female, age 72, unknown 25.4
2227 Male, age 72, unknown 24.9
1954 Female, age 42, unknown 24.4
2588 Male, age 74, left hemisphere 24.0
2769 Male, age 72, unknown 24.0
1865 Male, age 51, unknown 23.7
2584 Male, age 75, left hemisphere 23.1
2725 Female, age 75, unknown 22.5
Substantia nigra
nTPM: 26.2
1916 Female, age 42, unknown 35.0
1851 Male, age 51, unknown 31.3
2409 Female, age 72, unknown 28.5
2241 Male, age 72, unknown 28.4
1889 Female, age 72, unknown 27.4
1941 Male, age 53, unknown 27.3
2665 Male, age 74, both hemispheres 23.7
2583 Male, age 75, right hemisphere 21.3
2590 Female, age 75, unknown 21.1
2699 Male, age 18, unknown 17.6
Superior colliculus
nTPM: 23.4
2668 Female, age 75, unknown 30.1
2261 Male, age 18, unknown 26.3
1895 Male, age 76, right hemisphere 25.9
2087 Female, age 72, unknown 24.7
1796 Male, age 53, unknown 23.2
2587 Male, age 74, left hemisphere 22.4
2664 Male, age 75, both hemispheres 21.8
1913 Female, age 42, unknown 19.9
1839 Male, age 51, unknown 19.8
1995 Male, age 72, unknown 19.5
Ventral tegmental area
nTPM: 22.9
1915 Female, age 42, unknown 27.4
1942 Male, age 51, unknown 25.0
2410 Female, age 72, unknown 23.6
2218 Male, age 76, both hemispheres 21.6
2223 Female, age 72, unknown 21.2
2021 Male, age 53, unknown 18.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 139

Max nTPM: 49.1
Min nTPM: 7.2
Std nTPM: 8.3
Median nTPM: 25.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 47.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 46.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 40.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 39.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 39.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 67.6
Samples: 4

Max nTPM: 84.9
Min nTPM: 54.6
Sample A Female 84.9
Sample B Female 54.6
Sample C Male 74.4
Sample D Male 56.4
Midbrain
nTPM: 71.2
Samples: 4

Max nTPM: 78.7
Min nTPM: 60.4
Sample A Female 74.0
Sample B Female 60.4
Sample C Male 78.7
Sample D Male 71.5
Periaqueductal gray
nTPM: 55.2
Samples: 3

Max nTPM: 59.6
Min nTPM: 50.9
Sample B Female 55.0
Sample C Male 59.6
Sample D Male 50.9
Superior colliculi
nTPM: 75.4
Samples: 4

Max nTPM: 94.0
Min nTPM: 55.4
Sample A Female 86.2
Sample B Female 55.4
Sample C Male 94.0
Sample D Male 65.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 183.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 183.8
Samples: 4

Max nTPM: 184.7
Min nTPM: 181.8
Sample A Male 184.1
Sample B Male 181.8
Sample C Female 184.4
Sample D Female 184.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 11.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.4
70523706 Antisense, RP_050301_02_A09, Mouse strain C57BL/6J (56 days, male) 11.4

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