MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.0 nTPM
HPA Brain:25.2 nTPM
GTEx:13.0 nTPM
FANTOM5:16.6 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:19.2 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.9
2586 Male, age 75, left hemisphere 28.8
2019 Male, age 18, unknown 25.8
2219 Male, age 76, both hemispheres 24.8
1827 Male, age 72, unknown 23.4
2666 Male, age 74, left hemisphere 22.5
2828 Female, age 72, unknown 21.8
1833 Male, age 53, unknown 18.9
2411 Female, age 72, unknown 18.3
1870 Female, age 42, unknown 18.2
1830 Male, age 51, unknown 16.7
Dorsal raphe nucleus
nTPM: 20.7
2298 Female, age 72, unknown 23.7
1828 Male, age 53, unknown 23.0
2047 Male, age 72, unknown 21.2
2016 Female, age 72, unknown 18.6
2750 Male, age 76, both hemispheres 17.0
Inferior colliculus
nTPM: 21.8
2097 Female, age 72, unknown 23.2
1890 Male, age 53, unknown 22.5
1848 Female, age 42, unknown 21.0
2849 Male, age 72, unknown 20.4
Median raphe nucleus
nTPM: 21.5
2220 Male, age 76, midline 21.5
Periaquaductal grey, anterior
nTPM: 24.5
2502 Female, age 75, unknown 26.7
1795 Male, age 51, unknown 25.1
1947 Male, age 18, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 19.9
1840 Male, age 53, unknown 22.5
1831 Male, age 72, unknown 19.9
2850 Male, age 76, both hemispheres 19.8
2464 Female, age 72, unknown 17.3
Periaquaductal grey, lateral
nTPM: 19.4
2272 Male, age 74, both hemispheres 20.7
2140 Male, age 76, both hemispheres 19.0
2053 Male, age 18, unknown 18.4
Pretectal area
nTPM: 23.5
1816 Male, age 51, unknown 32.0
2007 Male, age 72, unknown 29.8
1944 Female, age 72, unknown 27.5
1817 Female, age 42, unknown 27.0
1815 Male, age 53, unknown 23.8
2273 Male, age 74, both hemispheres 21.7
2224 Female, age 72, unknown 21.0
2407 Male, age 75, both hemispheres 20.2
2667 Female, age 75, unknown 20.2
2825 Male, age 18, unknown 19.0
2316 Male, age 76, right hemisphere 16.7
Red nucleus
nTPM: 19.0
2785 Male, age 18, unknown 23.5
2584 Male, age 75, left hemisphere 21.2
2588 Male, age 74, left hemisphere 20.8
2725 Female, age 75, unknown 20.3
1821 Female, age 72, unknown 19.4
2227 Male, age 72, unknown 19.0
2769 Male, age 72, unknown 18.9
1954 Female, age 42, unknown 17.8
2823 Male, age 76, right hemisphere 17.8
2503 Female, age 72, unknown 17.3
1865 Male, age 51, unknown 16.2
1904 Male, age 53, unknown 16.2
Substantia nigra
nTPM: 25.2
1916 Female, age 42, unknown 33.3
2665 Male, age 74, both hemispheres 32.9
1851 Male, age 51, unknown 26.9
1941 Male, age 53, unknown 26.8
1889 Female, age 72, unknown 25.6
2583 Male, age 75, right hemisphere 24.5
2241 Male, age 72, unknown 23.9
2590 Female, age 75, unknown 22.2
2699 Male, age 18, unknown 21.1
2409 Female, age 72, unknown 14.9
Superior colliculus
nTPM: 22.3
2664 Male, age 75, both hemispheres 28.2
2087 Female, age 72, unknown 25.4
2261 Male, age 18, unknown 25.0
1796 Male, age 53, unknown 24.8
2668 Female, age 75, unknown 24.0
2587 Male, age 74, left hemisphere 20.3
1839 Male, age 51, unknown 20.2
1895 Male, age 76, right hemisphere 19.9
1913 Female, age 42, unknown 18.4
1995 Male, age 72, unknown 16.7
Ventral tegmental area
nTPM: 21.8
2218 Male, age 76, both hemispheres 25.5
1915 Female, age 42, unknown 24.7
2410 Female, age 72, unknown 23.0
1942 Male, age 51, unknown 22.6
2021 Male, age 53, unknown 17.4
2223 Female, age 72, unknown 17.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.0
Samples: 139

Max nTPM: 28.4
Min nTPM: 5.4
Std nTPM: 4.7
Median nTPM: 11.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 27.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 26.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 23.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 20.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.6
FF:10158-103A5 76 years, female 16.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 26.1
Min nTPM: 15.2
Sample A Female 20.6
Sample B Female 15.2
Sample C Male 26.1
Sample D Male 15.4
Midbrain
nTPM: 20.4
Samples: 4

Max nTPM: 24.8
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 18.7
Sample C Male 24.8
Sample D Male 22.9
Periaqueductal gray
nTPM: 18.4
Samples: 3

Max nTPM: 20.8
Min nTPM: 17.2
Sample B Female 17.2
Sample C Male 20.8
Sample D Male 17.3
Superior colliculi
nTPM: 19.9
Samples: 4

Max nTPM: 22.7
Min nTPM: 15.8
Sample A Female 20.0
Sample B Female 15.8
Sample C Male 22.7
Sample D Male 21.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.2
Samples: 4

Max nTPM: 22.4
Min nTPM: 15.2
Sample A Male 22.4
Sample B Male 18.5
Sample C Female 15.2
Sample D Female 20.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68445694 Antisense, RP_050113_01_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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