MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.7 nTPM
HPA Brain:128.9 nTPM
GTEx:78.7 nTPM
FANTOM5:143.8 Scaled Tags Per Million
Pig:109.5 nTPM
Mouse:81.0 nTPM
Allen mouse:4.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 128.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.1
1830 Male, age 51, unknown 139.7
2411 Female, age 72, unknown 139.3
1870 Female, age 42, unknown 129.4
1833 Male, age 53, unknown 126.3
2019 Male, age 18, unknown 120.3
2586 Male, age 75, left hemisphere 95.9
2828 Female, age 72, unknown 93.4
1827 Male, age 72, unknown 79.2
2666 Male, age 74, left hemisphere 74.2
2219 Male, age 76, both hemispheres 73.3
Dorsal raphe nucleus
nTPM: 77.1
2750 Male, age 76, both hemispheres 127.5
2016 Female, age 72, unknown 77.2
1828 Male, age 53, unknown 75.7
2047 Male, age 72, unknown 55.0
2298 Female, age 72, unknown 50.0
Inferior colliculus
nTPM: 71.9
1848 Female, age 42, unknown 77.1
1890 Male, age 53, unknown 74.8
2849 Male, age 72, unknown 71.7
2097 Female, age 72, unknown 64.1
Median raphe nucleus
nTPM: 77.6
2220 Male, age 76, midline 77.6
Periaquaductal grey, anterior
nTPM: 63.5
2502 Female, age 75, unknown 75.1
1947 Male, age 18, unknown 63.9
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 53.6
2464 Female, age 72, unknown 80.2
1831 Male, age 72, unknown 56.7
2850 Male, age 76, both hemispheres 39.5
1840 Male, age 53, unknown 38.1
Periaquaductal grey, lateral
nTPM: 59.0
2272 Male, age 74, both hemispheres 68.3
2053 Male, age 18, unknown 68.0
2140 Male, age 76, both hemispheres 40.6
Pretectal area
nTPM: 67.5
2316 Male, age 76, right hemisphere 88.5
1815 Male, age 53, unknown 87.6
2407 Male, age 75, both hemispheres 81.6
1817 Female, age 42, unknown 72.6
2825 Male, age 18, unknown 69.3
2273 Male, age 74, both hemispheres 68.1
2667 Female, age 75, unknown 67.2
2007 Male, age 72, unknown 64.9
2224 Female, age 72, unknown 53.1
1944 Female, age 72, unknown 45.8
1816 Male, age 51, unknown 44.3
Red nucleus
nTPM: 128.9
1904 Male, age 53, unknown 159.1
1821 Female, age 72, unknown 153.3
1865 Male, age 51, unknown 151.9
2227 Male, age 72, unknown 150.6
2769 Male, age 72, unknown 149.1
2785 Male, age 18, unknown 130.6
2823 Male, age 76, right hemisphere 129.3
1954 Female, age 42, unknown 121.4
2503 Female, age 72, unknown 115.7
2588 Male, age 74, left hemisphere 110.5
2584 Male, age 75, left hemisphere 94.8
2725 Female, age 75, unknown 80.5
Substantia nigra
nTPM: 72.8
2583 Male, age 75, right hemisphere 88.6
1889 Female, age 72, unknown 85.9
1851 Male, age 51, unknown 85.0
2590 Female, age 75, unknown 82.8
2409 Female, age 72, unknown 73.3
2699 Male, age 18, unknown 70.1
1941 Male, age 53, unknown 65.9
1916 Female, age 42, unknown 60.4
2665 Male, age 74, both hemispheres 58.2
2241 Male, age 72, unknown 57.4
Superior colliculus
nTPM: 88.1
1913 Female, age 42, unknown 141.2
1995 Male, age 72, unknown 119.8
2587 Male, age 74, left hemisphere 95.1
2668 Female, age 75, unknown 94.5
1839 Male, age 51, unknown 91.5
1895 Male, age 76, right hemisphere 91.3
2664 Male, age 75, both hemispheres 70.7
1796 Male, age 53, unknown 65.4
2261 Male, age 18, unknown 57.0
2087 Female, age 72, unknown 54.7
Ventral tegmental area
nTPM: 95.4
2223 Female, age 72, unknown 146.0
2410 Female, age 72, unknown 112.4
2218 Male, age 76, both hemispheres 82.5
1942 Male, age 51, unknown 80.4
2021 Male, age 53, unknown 79.1
1915 Female, age 42, unknown 72.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 78.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 78.7
Samples: 139

Max nTPM: 275.7
Min nTPM: 29.3
Std nTPM: 37.7
Median nTPM: 71.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 275.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 215.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 185.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 174.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 165.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 161.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 154.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 148.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 146.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 139.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 137.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.8
FF:10158-103A5 76 years, female 143.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 109.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 94.9
Samples: 4

Max nTPM: 132.2
Min nTPM: 71.2
Sample A Female 95.3
Sample B Female 71.2
Sample C Male 80.8
Sample D Male 132.2
Midbrain
nTPM: 109.5
Samples: 4

Max nTPM: 249.6
Min nTPM: 50.3
Sample A Female 249.6
Sample B Female 82.8
Sample C Male 55.3
Sample D Male 50.3
Periaqueductal gray
nTPM: 68.7
Samples: 3

Max nTPM: 72.5
Min nTPM: 65.2
Sample B Female 72.5
Sample C Male 65.2
Sample D Male 68.3
Superior colliculi
nTPM: 81.6
Samples: 4

Max nTPM: 91.0
Min nTPM: 72.9
Sample A Female 86.3
Sample B Female 72.9
Sample C Male 76.1
Sample D Male 91.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.0
Samples: 4

Max nTPM: 84.6
Min nTPM: 74.2
Sample A Male 83.3
Sample B Male 74.2
Sample C Female 82.0
Sample D Female 84.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
68341597 Antisense, RP_041207_01_G12, Mouse strain C57BL/6J (56 days, male) 4.0

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