MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:27.4 nTPM
GTEx:8.4 nTPM
FANTOM5:33.1 Scaled Tags Per Million
Pig:24.8 nTPM
Mouse:18.8 nTPM
Allen mouse:2.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.0
2019 Male, age 18, unknown 26.3
2219 Male, age 76, both hemispheres 26.3
1833 Male, age 53, unknown 26.1
1830 Male, age 51, unknown 26.0
1870 Female, age 42, unknown 24.3
2411 Female, age 72, unknown 21.8
1827 Male, age 72, unknown 20.9
2828 Female, age 72, unknown 20.6
2666 Male, age 74, left hemisphere 20.3
2586 Male, age 75, left hemisphere 17.6
Dorsal raphe nucleus
nTPM: 21.8
2047 Male, age 72, unknown 23.8
2016 Female, age 72, unknown 23.5
1828 Male, age 53, unknown 22.4
2750 Male, age 76, both hemispheres 21.1
2298 Female, age 72, unknown 18.5
Inferior colliculus
nTPM: 27.4
2849 Male, age 72, unknown 30.8
1848 Female, age 42, unknown 28.7
2097 Female, age 72, unknown 25.1
1890 Male, age 53, unknown 25.0
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 19.3
1947 Male, age 18, unknown 21.6
1795 Male, age 51, unknown 18.7
2502 Female, age 75, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 22.0
1840 Male, age 53, unknown 22.6
2464 Female, age 72, unknown 22.6
2850 Male, age 76, both hemispheres 21.8
1831 Male, age 72, unknown 21.1
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 22.1
2140 Male, age 76, both hemispheres 20.6
2053 Male, age 18, unknown 18.3
Pretectal area
nTPM: 22.3
2316 Male, age 76, right hemisphere 25.8
1944 Female, age 72, unknown 24.5
2407 Male, age 75, both hemispheres 24.2
1817 Female, age 42, unknown 23.6
2007 Male, age 72, unknown 23.5
2825 Male, age 18, unknown 22.1
2667 Female, age 75, unknown 21.3
1815 Male, age 53, unknown 20.8
2273 Male, age 74, both hemispheres 20.2
2224 Female, age 72, unknown 19.8
1816 Male, age 51, unknown 19.7
Red nucleus
nTPM: 23.4
1865 Male, age 51, unknown 26.5
2785 Male, age 18, unknown 26.0
1954 Female, age 42, unknown 24.7
1821 Female, age 72, unknown 24.5
2227 Male, age 72, unknown 24.1
1904 Male, age 53, unknown 23.7
2769 Male, age 72, unknown 23.5
2823 Male, age 76, right hemisphere 22.8
2725 Female, age 75, unknown 22.3
2503 Female, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.0
2584 Male, age 75, left hemisphere 19.7
Substantia nigra
nTPM: 23.5
2590 Female, age 75, unknown 28.4
1941 Male, age 53, unknown 26.6
1889 Female, age 72, unknown 24.1
2665 Male, age 74, both hemispheres 23.3
1916 Female, age 42, unknown 23.2
2409 Female, age 72, unknown 23.2
2583 Male, age 75, right hemisphere 22.4
2241 Male, age 72, unknown 21.7
2699 Male, age 18, unknown 21.4
1851 Male, age 51, unknown 20.7
Superior colliculus
nTPM: 22.1
1895 Male, age 76, right hemisphere 30.4
1839 Male, age 51, unknown 23.6
2087 Female, age 72, unknown 22.7
2587 Male, age 74, left hemisphere 22.2
1913 Female, age 42, unknown 21.6
2668 Female, age 75, unknown 21.4
2664 Male, age 75, both hemispheres 20.9
1995 Male, age 72, unknown 19.8
1796 Male, age 53, unknown 19.5
2261 Male, age 18, unknown 18.5
Ventral tegmental area
nTPM: 21.0
2410 Female, age 72, unknown 22.6
2218 Male, age 76, both hemispheres 21.7
2223 Female, age 72, unknown 21.5
1915 Female, age 42, unknown 20.8
2021 Male, age 53, unknown 19.8
1942 Male, age 51, unknown 19.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 20.4
Min nTPM: 3.2
Std nTPM: 2.6
Median nTPM: 8.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 20.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 16.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 14.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 12.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 12.5
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 12.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 11.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 11.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 11.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.1
FF:10158-103A5 76 years, female 33.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.8
Samples: 4

Max nTPM: 29.3
Min nTPM: 19.0
Sample A Female 19.0
Sample B Female 26.3
Sample C Male 24.7
Sample D Male 29.3
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 24.5
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 24.5
Sample C Male 21.3
Sample D Male 22.4
Periaqueductal gray
nTPM: 23.8
Samples: 3

Max nTPM: 25.6
Min nTPM: 22.3
Sample B Female 23.6
Sample C Male 25.6
Sample D Male 22.3
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 18.2
Sample A Female 18.2
Sample B Female 24.4
Sample C Male 19.6
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.8
Samples: 4

Max nTPM: 20.9
Min nTPM: 15.7
Sample A Male 20.1
Sample B Male 20.9
Sample C Female 18.6
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.5
68844325 Antisense, RP_050222_01_D06, Mouse strain C57BL/6J (56 days, male) 2.5

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