MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.5 nTPM
HPA Brain:38.6 nTPM
GTEx:38.5 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:61.3 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
2586 Male, age 75, left hemisphere 41.0
2666 Male, age 74, left hemisphere 37.6
1827 Male, age 72, unknown 37.0
2219 Male, age 76, both hemispheres 37.0
1870 Female, age 42, unknown 36.3
2019 Male, age 18, unknown 35.9
1833 Male, age 53, unknown 35.8
2828 Female, age 72, unknown 35.8
1830 Male, age 51, unknown 35.1
2411 Female, age 72, unknown 35.0
Dorsal raphe nucleus
nTPM: 35.9
2047 Male, age 72, unknown 38.4
2298 Female, age 72, unknown 37.2
1828 Male, age 53, unknown 36.5
2016 Female, age 72, unknown 33.8
2750 Male, age 76, both hemispheres 33.5
Inferior colliculus
nTPM: 36.4
2097 Female, age 72, unknown 36.9
2849 Male, age 72, unknown 36.8
1848 Female, age 42, unknown 35.9
1890 Male, age 53, unknown 35.9
Median raphe nucleus
nTPM: 35.9
2220 Male, age 76, midline 35.9
Periaquaductal grey, anterior
nTPM: 38.6
1947 Male, age 18, unknown 40.7
2502 Female, age 75, unknown 38.9
1795 Male, age 51, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 34.4
1840 Male, age 53, unknown 36.3
2850 Male, age 76, both hemispheres 34.7
2464 Female, age 72, unknown 34.4
1831 Male, age 72, unknown 32.4
Periaquaductal grey, lateral
nTPM: 33.9
2140 Male, age 76, both hemispheres 34.6
2053 Male, age 18, unknown 33.7
2272 Male, age 74, both hemispheres 33.5
Pretectal area
nTPM: 36.0
2007 Male, age 72, unknown 39.6
1816 Male, age 51, unknown 38.5
1817 Female, age 42, unknown 37.9
2667 Female, age 75, unknown 37.9
1944 Female, age 72, unknown 37.5
1815 Male, age 53, unknown 36.2
2224 Female, age 72, unknown 35.4
2316 Male, age 76, right hemisphere 34.1
2825 Male, age 18, unknown 33.7
2273 Male, age 74, both hemispheres 33.1
2407 Male, age 75, both hemispheres 32.6
Red nucleus
nTPM: 37.2
1821 Female, age 72, unknown 40.3
2227 Male, age 72, unknown 39.3
2588 Male, age 74, left hemisphere 39.1
1954 Female, age 42, unknown 38.8
2725 Female, age 75, unknown 37.7
2769 Male, age 72, unknown 37.3
1904 Male, age 53, unknown 36.4
1865 Male, age 51, unknown 36.0
2823 Male, age 76, right hemisphere 35.9
2503 Female, age 72, unknown 35.5
2785 Male, age 18, unknown 35.3
2584 Male, age 75, left hemisphere 34.3
Substantia nigra
nTPM: 36.9
1916 Female, age 42, unknown 46.0
1851 Male, age 51, unknown 40.7
2665 Male, age 74, both hemispheres 39.3
1941 Male, age 53, unknown 38.5
2699 Male, age 18, unknown 38.3
1889 Female, age 72, unknown 36.9
2583 Male, age 75, right hemisphere 34.5
2241 Male, age 72, unknown 32.7
2590 Female, age 75, unknown 31.0
2409 Female, age 72, unknown 30.8
Superior colliculus
nTPM: 35.5
2668 Female, age 75, unknown 38.9
2087 Female, age 72, unknown 37.8
2261 Male, age 18, unknown 36.9
1895 Male, age 76, right hemisphere 36.4
2664 Male, age 75, both hemispheres 35.9
1796 Male, age 53, unknown 35.0
1839 Male, age 51, unknown 34.7
2587 Male, age 74, left hemisphere 34.3
1995 Male, age 72, unknown 32.9
1913 Female, age 42, unknown 32.1
Ventral tegmental area
nTPM: 36.7
2410 Female, age 72, unknown 39.6
1915 Female, age 42, unknown 39.1
2218 Male, age 76, both hemispheres 36.3
1942 Male, age 51, unknown 36.0
2223 Female, age 72, unknown 34.7
2021 Male, age 53, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.5
Samples: 139

Max nTPM: 58.0
Min nTPM: 23.5
Std nTPM: 6.2
Median nTPM: 38.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 58.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 57.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 55.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 54.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 51.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 51.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 49.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 48.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.0
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 47.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.2
FF:10158-103A5 76 years, female 45.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.0
Samples: 4

Max nTPM: 39.6
Min nTPM: 27.1
Sample A Female 39.6
Sample B Female 27.1
Sample C Male 37.6
Sample D Male 31.7
Midbrain
nTPM: 35.9
Samples: 4

Max nTPM: 45.8
Min nTPM: 31.8
Sample A Female 45.8
Sample B Female 32.9
Sample C Male 32.9
Sample D Male 31.8
Periaqueductal gray
nTPM: 29.1
Samples: 3

Max nTPM: 31.9
Min nTPM: 27.2
Sample B Female 27.2
Sample C Male 31.9
Sample D Male 28.1
Superior colliculi
nTPM: 35.8
Samples: 4

Max nTPM: 41.2
Min nTPM: 30.5
Sample A Female 41.2
Sample B Female 30.5
Sample C Male 35.3
Sample D Male 36.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.3
Samples: 4

Max nTPM: 65.8
Min nTPM: 54.8
Sample A Male 64.5
Sample B Male 60.1
Sample C Female 54.8
Sample D Female 65.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
67815540 Antisense, RP_040920_01_G10, Mouse strain C57BL/6J (56 days, male) 1.4

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