MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:101.2 nTPM
GTEx:34.9 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:117.7 nTPM
Mouse:85.5 nTPM
Allen mouse:6.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 101.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.6
2586 Male, age 75, left hemisphere 118.5
2666 Male, age 74, left hemisphere 118.3
2828 Female, age 72, unknown 102.5
2219 Male, age 76, both hemispheres 100.1
1827 Male, age 72, unknown 98.8
1833 Male, age 53, unknown 95.9
1870 Female, age 42, unknown 86.8
1830 Male, age 51, unknown 84.7
2019 Male, age 18, unknown 82.6
2411 Female, age 72, unknown 78.0
Dorsal raphe nucleus
nTPM: 85.8
2016 Female, age 72, unknown 90.9
1828 Male, age 53, unknown 90.5
2047 Male, age 72, unknown 85.9
2750 Male, age 76, both hemispheres 81.1
2298 Female, age 72, unknown 80.4
Inferior colliculus
nTPM: 99.1
2849 Male, age 72, unknown 121.2
1848 Female, age 42, unknown 101.3
1890 Male, age 53, unknown 91.7
2097 Female, age 72, unknown 82.4
Median raphe nucleus
nTPM: 92.8
2220 Male, age 76, midline 92.8
Periaquaductal grey, anterior
nTPM: 95.3
1795 Male, age 51, unknown 97.0
1947 Male, age 18, unknown 94.6
2502 Female, age 75, unknown 94.3
Periaquaductal grey, dorsal
nTPM: 96.0
2850 Male, age 76, both hemispheres 105.7
1840 Male, age 53, unknown 104.1
2464 Female, age 72, unknown 87.5
1831 Male, age 72, unknown 86.7
Periaquaductal grey, lateral
nTPM: 89.1
2140 Male, age 76, both hemispheres 96.0
2053 Male, age 18, unknown 89.6
2272 Male, age 74, both hemispheres 81.8
Pretectal area
nTPM: 96.6
1816 Male, age 51, unknown 107.2
1817 Female, age 42, unknown 104.5
1815 Male, age 53, unknown 102.9
2407 Male, age 75, both hemispheres 100.8
1944 Female, age 72, unknown 100.2
2667 Female, age 75, unknown 98.1
2007 Male, age 72, unknown 96.0
2825 Male, age 18, unknown 96.0
2224 Female, age 72, unknown 91.9
2316 Male, age 76, right hemisphere 85.4
2273 Male, age 74, both hemispheres 79.5
Red nucleus
nTPM: 90.2
2584 Male, age 75, left hemisphere 104.8
2588 Male, age 74, left hemisphere 103.0
2725 Female, age 75, unknown 99.5
2503 Female, age 72, unknown 94.5
1821 Female, age 72, unknown 91.8
2769 Male, age 72, unknown 90.3
2785 Male, age 18, unknown 87.6
2227 Male, age 72, unknown 87.4
1865 Male, age 51, unknown 85.1
1904 Male, age 53, unknown 82.1
2823 Male, age 76, right hemisphere 78.8
1954 Female, age 42, unknown 77.7
Substantia nigra
nTPM: 101.2
2699 Male, age 18, unknown 121.9
2665 Male, age 74, both hemispheres 117.4
1916 Female, age 42, unknown 115.4
1851 Male, age 51, unknown 105.0
1889 Female, age 72, unknown 99.1
2241 Male, age 72, unknown 96.2
2583 Male, age 75, right hemisphere 95.0
1941 Male, age 53, unknown 90.9
2590 Female, age 75, unknown 89.5
2409 Female, age 72, unknown 81.5
Superior colliculus
nTPM: 93.6
2664 Male, age 75, both hemispheres 107.0
1796 Male, age 53, unknown 100.7
2587 Male, age 74, left hemisphere 97.3
1839 Male, age 51, unknown 96.0
2668 Female, age 75, unknown 93.7
2261 Male, age 18, unknown 91.6
2087 Female, age 72, unknown 91.1
1895 Male, age 76, right hemisphere 88.1
1995 Male, age 72, unknown 86.2
1913 Female, age 42, unknown 84.4
Ventral tegmental area
nTPM: 91.7
1915 Female, age 42, unknown 100.3
2218 Male, age 76, both hemispheres 95.7
2223 Female, age 72, unknown 92.3
1942 Male, age 51, unknown 89.6
2021 Male, age 53, unknown 89.0
2410 Female, age 72, unknown 83.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 53.7
Min nTPM: 9.2
Std nTPM: 7.0
Median nTPM: 35.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 53.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 52.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 49.6
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 49.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 47.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 46.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 45.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 45.5
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 45.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 44.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 117.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 110.9
Samples: 4

Max nTPM: 130.1
Min nTPM: 96.9
Sample A Female 117.0
Sample B Female 96.9
Sample C Male 130.1
Sample D Male 99.6
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 124.0
Min nTPM: 111.9
Sample A Female 121.9
Sample B Female 113.2
Sample C Male 111.9
Sample D Male 124.0
Periaqueductal gray
nTPM: 107.5
Samples: 3

Max nTPM: 120.5
Min nTPM: 91.3
Sample B Female 110.8
Sample C Male 120.5
Sample D Male 91.3
Superior colliculi
nTPM: 112.5
Samples: 4

Max nTPM: 129.4
Min nTPM: 85.6
Sample A Female 127.8
Sample B Female 85.6
Sample C Male 107.0
Sample D Male 129.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.5
Samples: 4

Max nTPM: 88.6
Min nTPM: 83.5
Sample A Male 88.6
Sample B Male 83.9
Sample C Female 86.0
Sample D Female 83.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.0
69444723 Antisense, RP_050414_04_D12, Mouse strain C57BL/6J (56 days, male) 6.0

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