MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.9 nTPM
HPA Brain:31.1 nTPM
GTEx:8.9 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:14.0 nTPM
Mouse:43.0 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.4
2219 Male, age 76, both hemispheres 31.1
2019 Male, age 18, unknown 30.7
1827 Male, age 72, unknown 28.7
2586 Male, age 75, left hemisphere 28.3
2411 Female, age 72, unknown 25.6
2828 Female, age 72, unknown 24.7
1830 Male, age 51, unknown 23.5
2666 Male, age 74, left hemisphere 22.0
1870 Female, age 42, unknown 20.1
1833 Male, age 53, unknown 19.2
Dorsal raphe nucleus
nTPM: 23.9
1828 Male, age 53, unknown 26.8
2047 Male, age 72, unknown 26.1
2298 Female, age 72, unknown 26.1
2016 Female, age 72, unknown 20.6
2750 Male, age 76, both hemispheres 20.0
Inferior colliculus
nTPM: 29.9
2097 Female, age 72, unknown 38.2
1890 Male, age 53, unknown 31.0
2849 Male, age 72, unknown 25.4
1848 Female, age 42, unknown 25.1
Median raphe nucleus
nTPM: 27.5
2220 Male, age 76, midline 27.5
Periaquaductal grey, anterior
nTPM: 28.9
1795 Male, age 51, unknown 32.7
2502 Female, age 75, unknown 28.2
1947 Male, age 18, unknown 25.8
Periaquaductal grey, dorsal
nTPM: 25.6
2850 Male, age 76, both hemispheres 30.5
1831 Male, age 72, unknown 24.8
2464 Female, age 72, unknown 24.5
1840 Male, age 53, unknown 22.6
Periaquaductal grey, lateral
nTPM: 27.4
2272 Male, age 74, both hemispheres 29.5
2140 Male, age 76, both hemispheres 29.2
2053 Male, age 18, unknown 23.6
Pretectal area
nTPM: 31.1
2407 Male, age 75, both hemispheres 40.2
2007 Male, age 72, unknown 39.2
1816 Male, age 51, unknown 33.3
2273 Male, age 74, both hemispheres 31.5
1944 Female, age 72, unknown 31.2
2825 Male, age 18, unknown 30.3
2316 Male, age 76, right hemisphere 29.8
1817 Female, age 42, unknown 29.4
1815 Male, age 53, unknown 29.1
2667 Female, age 75, unknown 26.3
2224 Female, age 72, unknown 22.2
Red nucleus
nTPM: 25.7
1865 Male, age 51, unknown 33.4
2584 Male, age 75, left hemisphere 33.1
2725 Female, age 75, unknown 33.1
2785 Male, age 18, unknown 27.6
1954 Female, age 42, unknown 27.4
2227 Male, age 72, unknown 24.0
1904 Male, age 53, unknown 23.1
1821 Female, age 72, unknown 22.4
2588 Male, age 74, left hemisphere 22.4
2503 Female, age 72, unknown 21.6
2823 Male, age 76, right hemisphere 20.6
2769 Male, age 72, unknown 19.9
Substantia nigra
nTPM: 26.5
2665 Male, age 74, both hemispheres 38.4
1941 Male, age 53, unknown 32.5
2241 Male, age 72, unknown 32.4
1889 Female, age 72, unknown 30.8
2590 Female, age 75, unknown 27.9
2583 Male, age 75, right hemisphere 24.6
2699 Male, age 18, unknown 23.2
1851 Male, age 51, unknown 21.3
1916 Female, age 42, unknown 20.7
2409 Female, age 72, unknown 13.5
Superior colliculus
nTPM: 25.8
2664 Male, age 75, both hemispheres 30.9
2587 Male, age 74, left hemisphere 30.2
1796 Male, age 53, unknown 29.9
2087 Female, age 72, unknown 28.5
2261 Male, age 18, unknown 27.5
1895 Male, age 76, right hemisphere 24.6
1913 Female, age 42, unknown 24.3
2668 Female, age 75, unknown 21.3
1839 Male, age 51, unknown 20.9
1995 Male, age 72, unknown 20.1
Ventral tegmental area
nTPM: 24.0
2218 Male, age 76, both hemispheres 30.0
1915 Female, age 42, unknown 26.3
2021 Male, age 53, unknown 22.9
1942 Male, age 51, unknown 22.8
2223 Female, age 72, unknown 22.5
2410 Female, age 72, unknown 19.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.9
Samples: 139

Max nTPM: 17.9
Min nTPM: 3.6
Std nTPM: 2.3
Median nTPM: 8.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 17.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 17.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 15.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 13.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 12.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 12.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 12.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 12.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 12.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.0
FF:10158-103A5 76 years, female 12.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.9
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.1
Sample A Female 14.4
Sample B Female 9.1
Sample C Male 14.6
Sample D Male 9.6
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.3
Sample A Female 10.5
Sample B Female 10.3
Sample C Male 17.6
Sample D Male 17.6
Periaqueductal gray
nTPM: 10.9
Samples: 3

Max nTPM: 12.5
Min nTPM: 10.1
Sample B Female 10.1
Sample C Male 12.5
Sample D Male 10.1
Superior colliculi
nTPM: 14.0
Samples: 4

Max nTPM: 16.5
Min nTPM: 10.1
Sample A Female 14.8
Sample B Female 10.1
Sample C Male 16.5
Sample D Male 14.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.0
Samples: 4

Max nTPM: 44.1
Min nTPM: 42.2
Sample A Male 42.2
Sample B Male 44.1
Sample C Female 43.3
Sample D Female 42.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
71656802 Antisense, RP_050927_04_D01, Mouse strain C57BL/6J (56 days, male) 8.0

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