HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:30.5 nTPM
GTEx:16.0 nTPM
FANTOM5:17.9 Scaled Tags Per Million
Pig:17.4 nTPM
Mouse:38.6 nTPM
Allen mouse:5.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.5
Sample id Sample description nTPM
Hippocampus
nTPM: 30.3
2529 Female, age 94, left hemisphere 36.7
1898 Male, age 80, left hemisphere 31.2
1855 Male, age 76, left hemisphere 29.6
1911 Female, age 85, right hemisphere 28.4
2621 Female, age 67, right hemisphere 28.2
2148 Female, age 91, left hemisphere 27.9
Dentate gyrus
nTPM: 30.0
2010 Male, age 76, both hemispheres 34.6
2530 Female, age 94, left hemisphere 31.6
2528 Male, age 74, both hemispheres 30.7
2246 Female, age 85, both hemispheres 29.8
2531 Female, age 67, both hemispheres 28.5
1927 Female, age 91, both hemispheres 24.7
Entorhinal gyrus
nTPM: 29.0
2117 Female, age 91, right hemisphere 32.2
1787 Male, age 76, left hemisphere 30.2
2764 Male, age 80, right hemisphere 29.7
2686 Male, age 75, right hemisphere 28.5
1938 Female, age 85, left hemisphere 28.2
2613 Female, age 94, left hemisphere 24.9
Hippocampus, CA1
nTPM: 28.5
2527 Male, age 74, both hemispheres 30.4
2082 Female, age 91, right hemisphere 29.4
1873 Female, age 85, both hemispheres 28.7
2749 Male, age 80, left hemisphere 27.0
2045 Male, age 76, both hemispheres 26.8
Hippocampus, CA2
nTPM: 29.4
1940 Female, age 85, left hemisphere 32.1
2249 Male, age 74, both hemispheres 32.1
1963 Male, age 80, left hemisphere 30.6
2113 Female, age 91, right hemisphere 30.1
2437 Female, age 94, left hemisphere 27.6
1892 Male, age 76, both hemispheres 23.8
Hippocampus, CA3
nTPM: 28.6
2436 Male, age 74, both hemispheres 35.0
1891 Female, age 85, both hemispheres 30.0
1867 Male, age 76, both hemispheres 27.8
2620 Female, age 94, left hemisphere 27.3
2861 Female, age 67, both hemispheres 26.3
2137 Male, age 80, left hemisphere 25.4
Parahippocampal cortex
nTPM: 29.1
2018 Male, age 76, both hemispheres 33.6
1850 Male, age 80, both hemispheres 30.4
2692 Male, age 74, both hemispheres 30.2
2532 Female, age 72, left hemisphere 30.0
1990 Female, age 91, right hemisphere 29.5
1933 Female, age 85, both hemispheres 27.9
2245 Female, age 91, both hemispheres 27.7
2250 Female, age 67, right hemisphere 27.7
2622 Female, age 67, right hemisphere 27.4
2693 Female, age 94, both hemispheres 26.4
Perirhinal gyrus
nTPM: 28.0
1794 Male, age 80, right hemisphere 32.3
1847 Female, age 91, left hemisphere 28.3
2521 Female, age 94, right hemisphere 28.0
1841 Female, age 85, right hemisphere 27.3
2848 Male, age 76, right hemisphere 24.3
Subiculum
nTPM: 30.5
2438 Female, age 94, left hemisphere 32.9
2729 Female, age 91, right hemisphere 32.0
2042 Male, age 76, both hemispheres 31.3
1977 Female, age 85, both hemispheres 29.3
2619 Male, age 74, both hemispheres 29.0
1901 Male, age 80, both hemispheres 28.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.0
Samples: 197

Max nTPM: 30.2
Min nTPM: 9.5
Std nTPM: 3.3
Median nTPM: 15.4
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 30.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 28.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 25.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 25.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 25.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 24.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 23.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 22.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 22.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 22.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.9
FF:10153-102I9 76 years, female 20.3
FF:10169-103B7 60 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.4
Pig sample Sample description nTPM
Subiculum
nTPM: 14.0
Samples: 4

Max nTPM: 17.6
Min nTPM: 12.3
Sample A Female 17.6
Sample B Female 13.2
Sample C Male 13.0
Sample D Male 12.3
Dorsal hippocampus
nTPM: 17.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 14.6
Sample A Female 20.5
Sample B Female 18.5
Sample C Male 16.1
Sample D Male 14.6
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.2
Sample A Female 15.6
Sample B Female 16.4
Sample C Male 14.4
Sample D Male 14.2
Ventral hippocampus
nTPM: 15.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 12.9
Sample A Female 15.0
Sample B Female 12.9
Sample C Male 17.0
Sample D Male 17.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 33.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 33.4
Sample A Male 33.7
Sample B Male 34.0
Sample C Female 33.4
Sample D Female 33.6
Hippocampal formation
nTPM: 38.6
Samples: 4

Max nTPM: 40.0
Min nTPM: 36.4
Sample A Male 40.0
Sample B Male 38.9
Sample C Female 36.4
Sample D Female 39.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
75749399 Antisense, RP_060518_01_B08, Mouse strain C57BL/6J (56 days, male) 6.5
71664148 Antisense, RP_050927_04_G09, Mouse strain C57BL/6J (56 days, male) 4.7

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