MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.3 nTPM
HPA Brain:95.6 nTPM
GTEx:31.3 nTPM
FANTOM5:146.5 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:45.0 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 70.4
2219 Male, age 76, both hemispheres 107.1
1833 Male, age 53, unknown 91.3
1870 Female, age 42, unknown 87.2
1830 Male, age 51, unknown 84.6
2411 Female, age 72, unknown 79.5
1827 Male, age 72, unknown 64.9
2019 Male, age 18, unknown 59.0
2828 Female, age 72, unknown 46.6
2586 Male, age 75, left hemisphere 43.1
2666 Male, age 74, left hemisphere 41.0
Dorsal raphe nucleus
nTPM: 77.3
2016 Female, age 72, unknown 86.9
1828 Male, age 53, unknown 81.6
2750 Male, age 76, both hemispheres 73.7
2298 Female, age 72, unknown 72.3
2047 Male, age 72, unknown 71.9
Inferior colliculus
nTPM: 95.6
2849 Male, age 72, unknown 122.0
1848 Female, age 42, unknown 106.1
2097 Female, age 72, unknown 80.7
1890 Male, age 53, unknown 73.7
Median raphe nucleus
nTPM: 78.3
2220 Male, age 76, midline 78.3
Periaquaductal grey, anterior
nTPM: 58.8
2502 Female, age 75, unknown 64.6
1947 Male, age 18, unknown 61.1
1795 Male, age 51, unknown 50.8
Periaquaductal grey, dorsal
nTPM: 90.6
1840 Male, age 53, unknown 112.6
2850 Male, age 76, both hemispheres 99.3
2464 Female, age 72, unknown 83.1
1831 Male, age 72, unknown 67.3
Periaquaductal grey, lateral
nTPM: 82.0
2140 Male, age 76, both hemispheres 92.3
2272 Male, age 74, both hemispheres 78.1
2053 Male, age 18, unknown 75.7
Pretectal area
nTPM: 67.8
2825 Male, age 18, unknown 90.5
2224 Female, age 72, unknown 88.8
2316 Male, age 76, right hemisphere 85.6
2667 Female, age 75, unknown 73.9
2273 Male, age 74, both hemispheres 73.4
2407 Male, age 75, both hemispheres 70.9
1944 Female, age 72, unknown 55.5
2007 Male, age 72, unknown 55.3
1817 Female, age 42, unknown 54.5
1815 Male, age 53, unknown 51.4
1816 Male, age 51, unknown 46.2
Red nucleus
nTPM: 67.4
1821 Female, age 72, unknown 82.9
2769 Male, age 72, unknown 77.4
1954 Female, age 42, unknown 75.4
2227 Male, age 72, unknown 74.8
2823 Male, age 76, right hemisphere 70.3
2725 Female, age 75, unknown 69.1
1865 Male, age 51, unknown 65.6
2584 Male, age 75, left hemisphere 62.5
1904 Male, age 53, unknown 62.2
2503 Female, age 72, unknown 59.0
2785 Male, age 18, unknown 56.8
2588 Male, age 74, left hemisphere 53.1
Substantia nigra
nTPM: 61.8
2699 Male, age 18, unknown 76.6
2241 Male, age 72, unknown 72.3
2409 Female, age 72, unknown 66.3
1889 Female, age 72, unknown 63.1
1941 Male, age 53, unknown 61.0
2665 Male, age 74, both hemispheres 60.3
2583 Male, age 75, right hemisphere 57.8
1916 Female, age 42, unknown 55.2
2590 Female, age 75, unknown 53.4
1851 Male, age 51, unknown 51.8
Superior colliculus
nTPM: 65.8
1895 Male, age 76, right hemisphere 106.3
1839 Male, age 51, unknown 97.3
2587 Male, age 74, left hemisphere 63.7
2664 Male, age 75, both hemispheres 60.7
1796 Male, age 53, unknown 58.5
2668 Female, age 75, unknown 57.3
1913 Female, age 42, unknown 57.1
1995 Male, age 72, unknown 55.9
2261 Male, age 18, unknown 51.4
2087 Female, age 72, unknown 49.4
Ventral tegmental area
nTPM: 63.4
2223 Female, age 72, unknown 70.3
2021 Male, age 53, unknown 66.3
1942 Male, age 51, unknown 65.1
1915 Female, age 42, unknown 61.0
2218 Male, age 76, both hemispheres 60.6
2410 Female, age 72, unknown 57.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.3
Samples: 139

Max nTPM: 79.5
Min nTPM: 16.0
Std nTPM: 8.6
Median nTPM: 29.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 79.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 65.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 50.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 45.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 45.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 44.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 44.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 44.3
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 43.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 42.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 146.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 146.5
FF:10158-103A5 76 years, female 146.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.3
Samples: 4

Max nTPM: 36.0
Min nTPM: 20.4
Sample A Female 36.0
Sample B Female 23.0
Sample C Male 29.8
Sample D Male 20.4
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 49.9
Min nTPM: 21.3
Sample A Female 21.3
Sample B Female 45.6
Sample C Male 34.2
Sample D Male 49.9
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 53.2
Min nTPM: 46.7
Sample B Female 53.2
Sample C Male 53.0
Sample D Male 46.7
Superior colliculi
nTPM: 37.3
Samples: 4

Max nTPM: 47.4
Min nTPM: 17.2
Sample A Female 47.4
Sample B Female 17.2
Sample C Male 37.6
Sample D Male 47.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 45.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 49.5
Min nTPM: 41.0
Sample A Male 41.0
Sample B Male 46.6
Sample C Female 49.5
Sample D Female 43.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
70300565 Antisense, RP_050607_01_G10, Mouse strain C57BL/6J (56 days, male) 12.1
73931640 Antisense, RP_051214_04_B08, Mouse strain C57BL/6J (56 days, male) 2.8

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