MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.8 nTPM
HPA Brain:73.9 nTPM
GTEx:55.8 nTPM
FANTOM5:84.3 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:129.6 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 73.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.5
2666 Male, age 74, left hemisphere 80.5
2019 Male, age 18, unknown 70.3
1870 Female, age 42, unknown 69.4
1833 Male, age 53, unknown 64.6
1830 Male, age 51, unknown 60.5
2828 Female, age 72, unknown 57.0
1827 Male, age 72, unknown 55.5
2411 Female, age 72, unknown 47.4
2586 Male, age 75, left hemisphere 47.0
2219 Male, age 76, both hemispheres 42.8
Dorsal raphe nucleus
nTPM: 52.2
2016 Female, age 72, unknown 62.2
1828 Male, age 53, unknown 55.0
2298 Female, age 72, unknown 52.4
2750 Male, age 76, both hemispheres 48.9
2047 Male, age 72, unknown 42.9
Inferior colliculus
nTPM: 60.3
1890 Male, age 53, unknown 63.8
2097 Female, age 72, unknown 62.4
1848 Female, age 42, unknown 59.7
2849 Male, age 72, unknown 55.2
Median raphe nucleus
nTPM: 40.6
2220 Male, age 76, midline 40.6
Periaquaductal grey, anterior
nTPM: 53.9
2502 Female, age 75, unknown 60.9
1947 Male, age 18, unknown 52.1
1795 Male, age 51, unknown 48.8
Periaquaductal grey, dorsal
nTPM: 49.9
2850 Male, age 76, both hemispheres 60.6
1831 Male, age 72, unknown 58.7
1840 Male, age 53, unknown 41.1
2464 Female, age 72, unknown 39.2
Periaquaductal grey, lateral
nTPM: 54.1
2053 Male, age 18, unknown 63.8
2272 Male, age 74, both hemispheres 54.9
2140 Male, age 76, both hemispheres 43.7
Pretectal area
nTPM: 60.3
2007 Male, age 72, unknown 72.8
1815 Male, age 53, unknown 71.3
1816 Male, age 51, unknown 70.4
1817 Female, age 42, unknown 68.8
1944 Female, age 72, unknown 64.1
2407 Male, age 75, both hemispheres 63.9
2224 Female, age 72, unknown 58.4
2273 Male, age 74, both hemispheres 57.5
2825 Male, age 18, unknown 46.7
2316 Male, age 76, right hemisphere 45.1
2667 Female, age 75, unknown 44.1
Red nucleus
nTPM: 73.9
1821 Female, age 72, unknown 90.4
1904 Male, age 53, unknown 88.3
1865 Male, age 51, unknown 79.5
2588 Male, age 74, left hemisphere 79.2
2725 Female, age 75, unknown 78.3
1954 Female, age 42, unknown 74.9
2785 Male, age 18, unknown 74.1
2503 Female, age 72, unknown 70.8
2227 Male, age 72, unknown 67.3
2769 Male, age 72, unknown 64.8
2584 Male, age 75, left hemisphere 61.2
2823 Male, age 76, right hemisphere 58.4
Substantia nigra
nTPM: 59.0
2590 Female, age 75, unknown 74.3
1889 Female, age 72, unknown 72.6
2409 Female, age 72, unknown 70.7
2665 Male, age 74, both hemispheres 65.7
2583 Male, age 75, right hemisphere 58.0
2699 Male, age 18, unknown 54.7
1851 Male, age 51, unknown 53.7
2241 Male, age 72, unknown 52.5
1941 Male, age 53, unknown 45.4
1916 Female, age 42, unknown 42.3
Superior colliculus
nTPM: 63.0
2587 Male, age 74, left hemisphere 85.6
1995 Male, age 72, unknown 79.3
1913 Female, age 42, unknown 76.0
1839 Male, age 51, unknown 62.7
2261 Male, age 18, unknown 59.3
2087 Female, age 72, unknown 58.2
1796 Male, age 53, unknown 54.8
2668 Female, age 75, unknown 53.6
2664 Male, age 75, both hemispheres 50.4
1895 Male, age 76, right hemisphere 50.0
Ventral tegmental area
nTPM: 54.1
2410 Female, age 72, unknown 68.0
2223 Female, age 72, unknown 61.3
2021 Male, age 53, unknown 51.3
2218 Male, age 76, both hemispheres 49.7
1915 Female, age 42, unknown 47.3
1942 Male, age 51, unknown 47.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 55.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.8
Samples: 139

Max nTPM: 118.3
Min nTPM: 20.2
Std nTPM: 18.3
Median nTPM: 53.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 118.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 117.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 95.9
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 95.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 95.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 91.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 91.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 91.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 89.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 89.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 86.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.3
FF:10158-103A5 76 years, female 84.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 26.3
Samples: 4

Max nTPM: 28.9
Min nTPM: 21.5
Sample A Female 28.2
Sample B Female 26.5
Sample C Male 21.5
Sample D Male 28.9
Midbrain
nTPM: 33.4
Samples: 4

Max nTPM: 44.2
Min nTPM: 29.4
Sample A Female 44.2
Sample B Female 30.2
Sample C Male 29.9
Sample D Male 29.4
Periaqueductal gray
nTPM: 24.4
Samples: 3

Max nTPM: 26.5
Min nTPM: 22.9
Sample B Female 26.5
Sample C Male 23.9
Sample D Male 22.9
Superior colliculi
nTPM: 31.6
Samples: 4

Max nTPM: 36.9
Min nTPM: 25.1
Sample A Female 36.9
Sample B Female 25.1
Sample C Male 33.6
Sample D Male 30.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.6
Samples: 4

Max nTPM: 137.4
Min nTPM: 120.9
Sample A Male 123.9
Sample B Male 120.9
Sample C Female 137.4
Sample D Female 136.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
95 Antisense, RP_Baylor_253873, Mouse strain C57BL/6J (56 days, male) 1.0
94 Antisense, RP_Baylor_253873, Mouse strain C57BL/6J (56 days, male) 0.8

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