MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.8 nTPM
HPA Brain:45.3 nTPM
GTEx:10.8 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:15.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
1830 Male, age 51, unknown 43.6
1833 Male, age 53, unknown 43.5
1870 Female, age 42, unknown 43.5
2219 Male, age 76, both hemispheres 42.0
1827 Male, age 72, unknown 41.7
2411 Female, age 72, unknown 41.3
2828 Female, age 72, unknown 38.1
2666 Male, age 74, left hemisphere 35.7
2586 Male, age 75, left hemisphere 33.3
2019 Male, age 18, unknown 30.0
Dorsal raphe nucleus
nTPM: 40.1
2750 Male, age 76, both hemispheres 46.7
2016 Female, age 72, unknown 43.0
2047 Male, age 72, unknown 40.7
1828 Male, age 53, unknown 36.9
2298 Female, age 72, unknown 33.3
Inferior colliculus
nTPM: 39.6
2849 Male, age 72, unknown 43.5
1848 Female, age 42, unknown 39.3
2097 Female, age 72, unknown 38.7
1890 Male, age 53, unknown 37.0
Median raphe nucleus
nTPM: 45.3
2220 Male, age 76, midline 45.3
Periaquaductal grey, anterior
nTPM: 37.4
1947 Male, age 18, unknown 39.8
2502 Female, age 75, unknown 37.8
1795 Male, age 51, unknown 34.6
Periaquaductal grey, dorsal
nTPM: 43.9
1840 Male, age 53, unknown 46.8
2850 Male, age 76, both hemispheres 44.4
1831 Male, age 72, unknown 42.4
2464 Female, age 72, unknown 41.9
Periaquaductal grey, lateral
nTPM: 39.9
2053 Male, age 18, unknown 44.5
2140 Male, age 76, both hemispheres 42.5
2272 Male, age 74, both hemispheres 32.6
Pretectal area
nTPM: 38.9
2316 Male, age 76, right hemisphere 46.1
2825 Male, age 18, unknown 44.9
2224 Female, age 72, unknown 42.9
2407 Male, age 75, both hemispheres 41.7
2667 Female, age 75, unknown 37.4
2273 Male, age 74, both hemispheres 37.0
1815 Male, age 53, unknown 36.8
1816 Male, age 51, unknown 36.3
1944 Female, age 72, unknown 35.9
2007 Male, age 72, unknown 35.1
1817 Female, age 42, unknown 33.9
Red nucleus
nTPM: 40.6
2588 Male, age 74, left hemisphere 46.9
2503 Female, age 72, unknown 43.3
1821 Female, age 72, unknown 42.4
1904 Male, age 53, unknown 42.3
2725 Female, age 75, unknown 41.8
1954 Female, age 42, unknown 41.2
1865 Male, age 51, unknown 40.7
2769 Male, age 72, unknown 40.1
2584 Male, age 75, left hemisphere 39.6
2823 Male, age 76, right hemisphere 39.3
2227 Male, age 72, unknown 36.1
2785 Male, age 18, unknown 34.1
Substantia nigra
nTPM: 40.8
2241 Male, age 72, unknown 45.0
2699 Male, age 18, unknown 45.0
1916 Female, age 42, unknown 43.0
1851 Male, age 51, unknown 41.2
2590 Female, age 75, unknown 41.1
2583 Male, age 75, right hemisphere 39.5
2665 Male, age 74, both hemispheres 39.2
2409 Female, age 72, unknown 38.7
1941 Male, age 53, unknown 38.4
1889 Female, age 72, unknown 37.4
Superior colliculus
nTPM: 39.7
1895 Male, age 76, right hemisphere 42.0
1913 Female, age 42, unknown 41.8
1839 Male, age 51, unknown 41.3
2587 Male, age 74, left hemisphere 40.8
1796 Male, age 53, unknown 40.2
2261 Male, age 18, unknown 39.8
2668 Female, age 75, unknown 39.0
1995 Male, age 72, unknown 38.7
2087 Female, age 72, unknown 38.3
2664 Male, age 75, both hemispheres 35.5
Ventral tegmental area
nTPM: 41.7
2223 Female, age 72, unknown 44.6
2021 Male, age 53, unknown 42.7
2218 Male, age 76, both hemispheres 42.3
1915 Female, age 42, unknown 40.7
1942 Male, age 51, unknown 40.6
2410 Female, age 72, unknown 39.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 10.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.8
Samples: 139

Max nTPM: 19.6
Min nTPM: 4.7
Std nTPM: 2.7
Median nTPM: 10.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 17.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 16.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 16.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 16.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 16.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 15.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 15.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 15.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 14.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.4
FF:10158-103A5 76 years, female 46.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 20.7
Sample A Female 21.7
Sample B Female 20.7
Sample C Male 22.4
Sample D Male 24.2
Midbrain
nTPM: 22.7
Samples: 4

Max nTPM: 25.2
Min nTPM: 19.4
Sample A Female 25.2
Sample B Female 23.0
Sample C Male 19.4
Sample D Male 23.0
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 23.8
Min nTPM: 19.9
Sample B Female 22.0
Sample C Male 19.9
Sample D Male 23.8
Superior colliculi
nTPM: 19.6
Samples: 4

Max nTPM: 22.0
Min nTPM: 17.1
Sample A Female 18.7
Sample B Female 17.1
Sample C Male 20.4
Sample D Male 22.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.6
Sample A Male 14.6
Sample B Male 15.6
Sample C Female 16.9
Sample D Female 16.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74277342 Antisense, RP_051121_03_H03, Mouse strain C57BL/6J (56 days, male) 0.0

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