MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.4 nTPM
HPA Brain:57.5 nTPM
GTEx:68.4 nTPM
FANTOM5:59.8 Scaled Tags Per Million
Pig:93.5 nTPM
Mouse:102.2 nTPM
Allen mouse:5.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.9
2666 Male, age 74, left hemisphere 64.1
1827 Male, age 72, unknown 52.3
2219 Male, age 76, both hemispheres 50.3
2828 Female, age 72, unknown 50.0
2586 Male, age 75, left hemisphere 45.2
2019 Male, age 18, unknown 44.5
1870 Female, age 42, unknown 42.7
1830 Male, age 51, unknown 42.3
1833 Male, age 53, unknown 39.4
2411 Female, age 72, unknown 38.3
Dorsal raphe nucleus
nTPM: 48.0
2298 Female, age 72, unknown 56.2
2016 Female, age 72, unknown 54.1
2047 Male, age 72, unknown 46.6
1828 Male, age 53, unknown 45.1
2750 Male, age 76, both hemispheres 38.3
Inferior colliculus
nTPM: 51.1
1890 Male, age 53, unknown 60.0
2849 Male, age 72, unknown 50.9
2097 Female, age 72, unknown 49.3
1848 Female, age 42, unknown 44.2
Median raphe nucleus
nTPM: 47.7
2220 Male, age 76, midline 47.7
Periaquaductal grey, anterior
nTPM: 50.6
1795 Male, age 51, unknown 60.7
1947 Male, age 18, unknown 45.6
2502 Female, age 75, unknown 45.4
Periaquaductal grey, dorsal
nTPM: 50.0
1831 Male, age 72, unknown 53.5
2850 Male, age 76, both hemispheres 52.9
2464 Female, age 72, unknown 47.3
1840 Male, age 53, unknown 46.5
Periaquaductal grey, lateral
nTPM: 53.5
2272 Male, age 74, both hemispheres 54.7
2053 Male, age 18, unknown 53.5
2140 Male, age 76, both hemispheres 52.2
Pretectal area
nTPM: 57.5
1816 Male, age 51, unknown 81.3
2007 Male, age 72, unknown 66.4
1817 Female, age 42, unknown 61.6
1944 Female, age 72, unknown 61.1
1815 Male, age 53, unknown 60.7
2224 Female, age 72, unknown 58.5
2667 Female, age 75, unknown 56.6
2273 Male, age 74, both hemispheres 52.3
2825 Male, age 18, unknown 51.0
2316 Male, age 76, right hemisphere 43.1
2407 Male, age 75, both hemispheres 39.4
Red nucleus
nTPM: 44.3
2588 Male, age 74, left hemisphere 60.7
2725 Female, age 75, unknown 48.2
2584 Male, age 75, left hemisphere 47.1
2503 Female, age 72, unknown 46.8
2785 Male, age 18, unknown 46.2
2227 Male, age 72, unknown 44.2
1954 Female, age 42, unknown 44.0
2769 Male, age 72, unknown 40.7
2823 Male, age 76, right hemisphere 39.9
1865 Male, age 51, unknown 38.6
1904 Male, age 53, unknown 37.4
1821 Female, age 72, unknown 37.1
Substantia nigra
nTPM: 47.8
2665 Male, age 74, both hemispheres 85.2
1941 Male, age 53, unknown 52.9
2590 Female, age 75, unknown 49.0
2583 Male, age 75, right hemisphere 47.2
1889 Female, age 72, unknown 46.3
2409 Female, age 72, unknown 43.3
1851 Male, age 51, unknown 40.4
1916 Female, age 42, unknown 39.6
2699 Male, age 18, unknown 38.7
2241 Male, age 72, unknown 35.8
Superior colliculus
nTPM: 51.9
2261 Male, age 18, unknown 73.7
2087 Female, age 72, unknown 66.4
1796 Male, age 53, unknown 51.4
1995 Male, age 72, unknown 50.9
2587 Male, age 74, left hemisphere 50.5
1913 Female, age 42, unknown 48.9
2668 Female, age 75, unknown 48.4
2664 Male, age 75, both hemispheres 44.9
1839 Male, age 51, unknown 42.6
1895 Male, age 76, right hemisphere 41.4
Ventral tegmental area
nTPM: 43.8
2223 Female, age 72, unknown 50.2
2021 Male, age 53, unknown 46.8
1915 Female, age 42, unknown 44.3
2218 Male, age 76, both hemispheres 44.1
1942 Male, age 51, unknown 42.8
2410 Female, age 72, unknown 34.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.4
Samples: 139

Max nTPM: 500.7
Min nTPM: 33.3
Std nTPM: 42.5
Median nTPM: 63.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 500.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 155.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 143.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 126.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 123.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 119.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 117.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 115.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 109.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 107.1
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 102.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 59.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 59.8
FF:10158-103A5 76 years, female 59.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 81.9
Samples: 4

Max nTPM: 173.7
Min nTPM: 41.7
Sample A Female 62.0
Sample B Female 173.7
Sample C Male 50.3
Sample D Male 41.7
Midbrain
nTPM: 68.1
Samples: 4

Max nTPM: 127.6
Min nTPM: 38.1
Sample A Female 38.1
Sample B Female 45.6
Sample C Male 127.6
Sample D Male 61.0
Periaqueductal gray
nTPM: 41.3
Samples: 3

Max nTPM: 48.3
Min nTPM: 33.9
Sample B Female 41.6
Sample C Male 48.3
Sample D Male 33.9
Superior colliculi
nTPM: 93.5
Samples: 4

Max nTPM: 133.8
Min nTPM: 66.2
Sample A Female 66.2
Sample B Female 98.8
Sample C Male 133.8
Sample D Male 75.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.2
Samples: 4

Max nTPM: 106.4
Min nTPM: 99.5
Sample A Male 106.4
Sample B Male 101.9
Sample C Female 100.8
Sample D Female 99.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.6
69817031 Antisense, RP_050510_02_D12, Mouse strain C57BL/6J (56 days, male) 5.6

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