HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:16.8 nTPM
HPA Brain:23.2 nTPM
GTEx:16.8 nTPM
FANTOM5:47.6 Scaled Tags Per Million
Pig:7.0 nTPM
Mouse:11.8 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041347
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.2
Sample id Sample description nTPM
Hippocampus
nTPM: 23.2
2529 Female, age 94, left hemisphere 25.9
2148 Female, age 91, left hemisphere 23.7
2621 Female, age 67, right hemisphere 23.7
1898 Male, age 80, left hemisphere 23.5
1855 Male, age 76, left hemisphere 21.8
1911 Female, age 85, right hemisphere 20.6
Dentate gyrus
nTPM: 22.4
2530 Female, age 94, left hemisphere 24.9
2531 Female, age 67, both hemispheres 24.8
2246 Female, age 85, both hemispheres 22.0
2528 Male, age 74, both hemispheres 22.0
2010 Male, age 76, both hemispheres 20.7
1927 Female, age 91, both hemispheres 20.4
Entorhinal gyrus
nTPM: 23.0
2686 Male, age 75, right hemisphere 24.4
2117 Female, age 91, right hemisphere 24.1
2764 Male, age 80, right hemisphere 24.0
1787 Male, age 76, left hemisphere 22.3
1938 Female, age 85, left hemisphere 22.1
2613 Female, age 94, left hemisphere 21.2
Hippocampus, CA1
nTPM: 22.0
2749 Male, age 80, left hemisphere 22.9
1873 Female, age 85, both hemispheres 22.6
2045 Male, age 76, both hemispheres 22.0
2527 Male, age 74, both hemispheres 22.0
2082 Female, age 91, right hemisphere 20.8
Hippocampus, CA2
nTPM: 21.4
2113 Female, age 91, right hemisphere 22.4
1963 Male, age 80, left hemisphere 22.1
1892 Male, age 76, both hemispheres 21.5
1940 Female, age 85, left hemisphere 21.5
2437 Female, age 94, left hemisphere 20.9
2249 Male, age 74, both hemispheres 20.2
Hippocampus, CA3
nTPM: 23.1
2861 Female, age 67, both hemispheres 25.6
2620 Female, age 94, left hemisphere 23.7
1891 Female, age 85, both hemispheres 23.0
2137 Male, age 80, left hemisphere 22.4
1867 Male, age 76, both hemispheres 22.0
2436 Male, age 74, both hemispheres 22.0
Parahippocampal cortex
nTPM: 20.9
2692 Male, age 74, both hemispheres 22.8
1990 Female, age 91, right hemisphere 22.3
1850 Male, age 80, both hemispheres 22.1
2018 Male, age 76, both hemispheres 21.4
2532 Female, age 72, left hemisphere 21.0
2245 Female, age 91, both hemispheres 20.9
2622 Female, age 67, right hemisphere 20.4
1933 Female, age 85, both hemispheres 20.3
2250 Female, age 67, right hemisphere 19.8
2693 Female, age 94, both hemispheres 18.3
Perirhinal gyrus
nTPM: 21.0
1794 Male, age 80, right hemisphere 23.4
2848 Male, age 76, right hemisphere 21.7
1847 Female, age 91, left hemisphere 20.3
1841 Female, age 85, right hemisphere 20.1
2521 Female, age 94, right hemisphere 19.5
Subiculum
nTPM: 22.0
1901 Male, age 80, both hemispheres 23.3
2619 Male, age 74, both hemispheres 22.8
1977 Female, age 85, both hemispheres 22.5
2042 Male, age 76, both hemispheres 22.4
2729 Female, age 91, right hemisphere 22.0
2438 Female, age 94, left hemisphere 19.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 16.8
Samples: 197

Max nTPM: 35.2
Min nTPM: 7.8
Std nTPM: 4.1
Median nTPM: 16.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 35.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 34.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 27.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 26.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 25.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 24.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 24.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 24.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 24.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 24.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 23.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 47.6
FF:10153-102I9 76 years, female 51.6
FF:10169-103B7 60 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 7.0
Pig sample Sample description nTPM
Subiculum
nTPM: 6.5
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.3
Sample A Female 8.0
Sample B Female 6.4
Sample C Male 6.1
Sample D Male 5.3
Dorsal hippocampus
nTPM: 7.0
Samples: 4

Max nTPM: 8.5
Min nTPM: 5.8
Sample A Female 8.5
Sample B Female 6.9
Sample C Male 6.7
Sample D Male 5.8
Entorhinal cortex
nTPM: 6.0
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.1
Sample A Female 6.9
Sample B Female 6.4
Sample C Male 5.7
Sample D Male 5.1
Ventral hippocampus
nTPM: 6.7
Samples: 4

Max nTPM: 8.0
Min nTPM: 5.2
Sample A Female 6.5
Sample B Female 5.2
Sample C Male 8.0
Sample D Male 6.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.7
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.7
Sample A Male 12.7
Sample B Male 10.7
Sample C Female 10.9
Sample D Female 12.6
Hippocampal formation
nTPM: 11.8
Samples: 4

Max nTPM: 13.9
Min nTPM: 9.9
Sample A Male 9.9
Sample B Male 12.0
Sample C Female 13.9
Sample D Female 11.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
69838420 Antisense, RP_050303_01_D11, Mouse strain C57BL/6J (56 days, male) 0.2

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