MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:41.7 nTPM
HPA Brain:31.0 nTPM
GTEx:41.7 nTPM
FANTOM5:30.3 Scaled Tags Per Million
Mouse:8.9 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.5
2019 Male, age 18, unknown 33.1
2666 Male, age 74, left hemisphere 29.6
2586 Male, age 75, left hemisphere 29.3
2411 Female, age 72, unknown 27.6
2828 Female, age 72, unknown 25.9
2219 Male, age 76, both hemispheres 24.7
1833 Male, age 53, unknown 22.6
1870 Female, age 42, unknown 21.7
1827 Male, age 72, unknown 21.0
1830 Male, age 51, unknown 19.6
Dorsal raphe nucleus
nTPM: 31.0
2047 Male, age 72, unknown 39.4
2298 Female, age 72, unknown 33.9
1828 Male, age 53, unknown 32.1
2750 Male, age 76, both hemispheres 26.7
2016 Female, age 72, unknown 23.0
Inferior colliculus
nTPM: 21.5
1890 Male, age 53, unknown 23.6
2097 Female, age 72, unknown 21.2
1848 Female, age 42, unknown 20.6
2849 Male, age 72, unknown 20.6
Median raphe nucleus
nTPM: 27.6
2220 Male, age 76, midline 27.6
Periaquaductal grey, anterior
nTPM: 22.2
1795 Male, age 51, unknown 25.7
2502 Female, age 75, unknown 20.7
1947 Male, age 18, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 20.8
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 21.1
2850 Male, age 76, both hemispheres 20.8
1840 Male, age 53, unknown 17.9
Periaquaductal grey, lateral
nTPM: 21.0
2272 Male, age 74, both hemispheres 24.5
2140 Male, age 76, both hemispheres 22.3
2053 Male, age 18, unknown 16.1
Pretectal area
nTPM: 24.6
2007 Male, age 72, unknown 31.4
1817 Female, age 42, unknown 28.6
1816 Male, age 51, unknown 24.5
2316 Male, age 76, right hemisphere 24.5
2224 Female, age 72, unknown 24.2
1944 Female, age 72, unknown 24.0
2667 Female, age 75, unknown 23.6
2273 Male, age 74, both hemispheres 23.5
1815 Male, age 53, unknown 23.0
2407 Male, age 75, both hemispheres 22.0
2825 Male, age 18, unknown 21.7
Red nucleus
nTPM: 27.8
2725 Female, age 75, unknown 35.4
2588 Male, age 74, left hemisphere 33.6
2823 Male, age 76, right hemisphere 31.2
2785 Male, age 18, unknown 29.5
2503 Female, age 72, unknown 28.7
2227 Male, age 72, unknown 27.4
1865 Male, age 51, unknown 26.5
1904 Male, age 53, unknown 25.8
1954 Female, age 42, unknown 25.3
2769 Male, age 72, unknown 24.5
2584 Male, age 75, left hemisphere 23.5
1821 Female, age 72, unknown 22.9
Substantia nigra
nTPM: 26.0
1916 Female, age 42, unknown 38.0
1851 Male, age 51, unknown 31.4
2699 Male, age 18, unknown 31.1
1941 Male, age 53, unknown 25.9
2241 Male, age 72, unknown 24.4
1889 Female, age 72, unknown 23.7
2665 Male, age 74, both hemispheres 23.1
2583 Male, age 75, right hemisphere 22.2
2590 Female, age 75, unknown 21.9
2409 Female, age 72, unknown 18.4
Superior colliculus
nTPM: 22.5
2087 Female, age 72, unknown 31.7
1796 Male, age 53, unknown 24.7
2587 Male, age 74, left hemisphere 23.4
2668 Female, age 75, unknown 22.4
1839 Male, age 51, unknown 21.4
2664 Male, age 75, both hemispheres 21.1
1895 Male, age 76, right hemisphere 20.4
2261 Male, age 18, unknown 20.3
1913 Female, age 42, unknown 20.2
1995 Male, age 72, unknown 19.6
Ventral tegmental area
nTPM: 24.5
1915 Female, age 42, unknown 29.6
2021 Male, age 53, unknown 27.4
2410 Female, age 72, unknown 24.8
1942 Male, age 51, unknown 23.6
2218 Male, age 76, both hemispheres 21.6
2223 Female, age 72, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 41.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 41.7
Samples: 139

Max nTPM: 110.1
Min nTPM: 14.8
Std nTPM: 13.7
Median nTPM: 38.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 110.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 86.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 82.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 81.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 79.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 72.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 61.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 59.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 57.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 57.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.3
FF:10158-103A5 76 years, female 30.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.9
Sample A Male 9.5
Sample B Male 8.4
Sample C Female 7.9
Sample D Female 9.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
67767468 Antisense, RP_040916_02_B08, Mouse strain C57BL/6J (56 days, male) 4.2
68845251 Antisense, RP_050224_01_D08, Mouse strain C57BL/6J (56 days, male) 0.1

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