MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:185.2 nTPM
HPA Brain:104.9 nTPM
GTEx:185.2 nTPM
FANTOM5:142.0 Scaled Tags Per Million
Pig:178.2 nTPM
Mouse:260.8 nTPM
Allen mouse:14.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 104.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.7
2019 Male, age 18, unknown 103.2
2219 Male, age 76, both hemispheres 99.4
1827 Male, age 72, unknown 90.3
1870 Female, age 42, unknown 84.4
2586 Male, age 75, left hemisphere 83.0
2828 Female, age 72, unknown 80.7
2411 Female, age 72, unknown 78.4
1833 Male, age 53, unknown 77.9
2666 Male, age 74, left hemisphere 76.7
1830 Male, age 51, unknown 72.9
Dorsal raphe nucleus
nTPM: 86.2
1828 Male, age 53, unknown 95.6
2298 Female, age 72, unknown 93.7
2047 Male, age 72, unknown 84.7
2750 Male, age 76, both hemispheres 80.5
2016 Female, age 72, unknown 76.5
Inferior colliculus
nTPM: 88.1
2097 Female, age 72, unknown 96.8
1890 Male, age 53, unknown 93.7
2849 Male, age 72, unknown 83.5
1848 Female, age 42, unknown 78.2
Median raphe nucleus
nTPM: 87.6
2220 Male, age 76, midline 87.6
Periaquaductal grey, anterior
nTPM: 85.0
1795 Male, age 51, unknown 89.9
2502 Female, age 75, unknown 83.2
1947 Male, age 18, unknown 81.9
Periaquaductal grey, dorsal
nTPM: 74.5
2850 Male, age 76, both hemispheres 83.9
1840 Male, age 53, unknown 75.2
1831 Male, age 72, unknown 72.2
2464 Female, age 72, unknown 66.7
Periaquaductal grey, lateral
nTPM: 78.1
2272 Male, age 74, both hemispheres 100.5
2053 Male, age 18, unknown 69.4
2140 Male, age 76, both hemispheres 64.5
Pretectal area
nTPM: 96.1
1817 Female, age 42, unknown 124.5
2007 Male, age 72, unknown 113.9
1816 Male, age 51, unknown 109.7
1944 Female, age 72, unknown 102.7
1815 Male, age 53, unknown 101.4
2667 Female, age 75, unknown 101.2
2273 Male, age 74, both hemispheres 96.2
2224 Female, age 72, unknown 86.7
2407 Male, age 75, both hemispheres 82.4
2825 Male, age 18, unknown 74.6
2316 Male, age 76, right hemisphere 63.6
Red nucleus
nTPM: 94.7
1821 Female, age 72, unknown 116.5
2725 Female, age 75, unknown 114.7
2503 Female, age 72, unknown 102.5
2785 Male, age 18, unknown 101.6
1865 Male, age 51, unknown 96.1
2769 Male, age 72, unknown 91.3
1904 Male, age 53, unknown 90.5
2227 Male, age 72, unknown 90.0
2823 Male, age 76, right hemisphere 87.2
1954 Female, age 42, unknown 86.7
2584 Male, age 75, left hemisphere 81.7
2588 Male, age 74, left hemisphere 78.2
Substantia nigra
nTPM: 104.9
1916 Female, age 42, unknown 153.5
1889 Female, age 72, unknown 119.9
1941 Male, age 53, unknown 115.4
2699 Male, age 18, unknown 114.7
1851 Male, age 51, unknown 114.5
2241 Male, age 72, unknown 100.4
2665 Male, age 74, both hemispheres 89.7
2409 Female, age 72, unknown 89.3
2590 Female, age 75, unknown 76.4
2583 Male, age 75, right hemisphere 75.5
Superior colliculus
nTPM: 82.5
2087 Female, age 72, unknown 89.6
1796 Male, age 53, unknown 89.3
1895 Male, age 76, right hemisphere 88.9
2587 Male, age 74, left hemisphere 88.0
2668 Female, age 75, unknown 86.3
1913 Female, age 42, unknown 81.2
2261 Male, age 18, unknown 80.6
1995 Male, age 72, unknown 76.7
1839 Male, age 51, unknown 75.8
2664 Male, age 75, both hemispheres 69.0
Ventral tegmental area
nTPM: 95.3
2218 Male, age 76, both hemispheres 109.9
2410 Female, age 72, unknown 109.2
1915 Female, age 42, unknown 105.9
2223 Female, age 72, unknown 95.8
1942 Male, age 51, unknown 84.0
2021 Male, age 53, unknown 66.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 185.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 185.2
Samples: 139

Max nTPM: 350.2
Min nTPM: 95.1
Std nTPM: 43.1
Median nTPM: 178.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 350.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 328.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 291.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 282.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 278.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 274.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 271.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 268.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 266.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 261.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 256.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 142.0
FF:10158-103A5 76 years, female 142.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 178.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 145.6
Samples: 4

Max nTPM: 194.9
Min nTPM: 119.6
Sample A Female 194.9
Sample B Female 119.6
Sample C Male 143.7
Sample D Male 124.1
Midbrain
nTPM: 168.6
Samples: 4

Max nTPM: 209.3
Min nTPM: 140.8
Sample A Female 209.3
Sample B Female 140.8
Sample C Male 173.8
Sample D Male 150.4
Periaqueductal gray
nTPM: 128.0
Samples: 3

Max nTPM: 144.8
Min nTPM: 114.0
Sample B Female 125.2
Sample C Male 144.8
Sample D Male 114.0
Superior colliculi
nTPM: 178.2
Samples: 4

Max nTPM: 210.4
Min nTPM: 141.0
Sample A Female 210.4
Sample B Female 141.0
Sample C Male 196.2
Sample D Male 165.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 260.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 260.8
Samples: 4

Max nTPM: 277.7
Min nTPM: 244.4
Sample A Male 277.7
Sample B Male 253.5
Sample C Female 244.4
Sample D Female 267.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 14.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.9
71608213 Antisense, RP_050927_01_B09, Mouse strain C57BL/6J (56 days, male) 14.9

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