MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.3 nTPM
HPA Brain:18.8 nTPM
GTEx:15.3 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:17.7 nTPM
Mouse:21.2 nTPM
Allen mouse:9.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2019 Male, age 18, unknown 21.3
2586 Male, age 75, left hemisphere 19.1
1833 Male, age 53, unknown 18.1
2828 Female, age 72, unknown 18.1
1870 Female, age 42, unknown 17.9
1830 Male, age 51, unknown 17.7
2411 Female, age 72, unknown 17.4
1827 Male, age 72, unknown 16.6
2666 Male, age 74, left hemisphere 16.0
2219 Male, age 76, both hemispheres 15.8
Dorsal raphe nucleus
nTPM: 16.3
2047 Male, age 72, unknown 17.4
2750 Male, age 76, both hemispheres 17.3
1828 Male, age 53, unknown 15.9
2016 Female, age 72, unknown 15.9
2298 Female, age 72, unknown 15.2
Inferior colliculus
nTPM: 18.4
2097 Female, age 72, unknown 19.4
2849 Male, age 72, unknown 19.0
1848 Female, age 42, unknown 18.4
1890 Male, age 53, unknown 16.8
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Periaquaductal grey, anterior
nTPM: 16.8
2502 Female, age 75, unknown 17.9
1795 Male, age 51, unknown 16.5
1947 Male, age 18, unknown 16.0
Periaquaductal grey, dorsal
nTPM: 16.2
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 16.7
2850 Male, age 76, both hemispheres 15.3
1831 Male, age 72, unknown 15.2
Periaquaductal grey, lateral
nTPM: 16.2
2272 Male, age 74, both hemispheres 18.9
2053 Male, age 18, unknown 15.1
2140 Male, age 76, both hemispheres 14.5
Pretectal area
nTPM: 17.5
2007 Male, age 72, unknown 20.5
1817 Female, age 42, unknown 20.4
1944 Female, age 72, unknown 17.8
1815 Male, age 53, unknown 17.6
2667 Female, age 75, unknown 17.4
1816 Male, age 51, unknown 17.2
2273 Male, age 74, both hemispheres 17.2
2407 Male, age 75, both hemispheres 16.7
2224 Female, age 72, unknown 16.5
2825 Male, age 18, unknown 15.9
2316 Male, age 76, right hemisphere 15.5
Red nucleus
nTPM: 18.8
2785 Male, age 18, unknown 20.6
2725 Female, age 75, unknown 20.5
2588 Male, age 74, left hemisphere 19.6
2769 Male, age 72, unknown 19.5
1821 Female, age 72, unknown 19.3
1865 Male, age 51, unknown 19.3
1954 Female, age 42, unknown 19.1
2503 Female, age 72, unknown 19.0
2227 Male, age 72, unknown 18.2
2823 Male, age 76, right hemisphere 18.0
1904 Male, age 53, unknown 16.5
2584 Male, age 75, left hemisphere 15.9
Substantia nigra
nTPM: 17.3
2409 Female, age 72, unknown 19.2
1916 Female, age 42, unknown 18.6
1889 Female, age 72, unknown 18.4
1941 Male, age 53, unknown 18.0
1851 Male, age 51, unknown 17.6
2699 Male, age 18, unknown 17.5
2590 Female, age 75, unknown 17.4
2583 Male, age 75, right hemisphere 16.1
2665 Male, age 74, both hemispheres 16.0
2241 Male, age 72, unknown 14.7
Superior colliculus
nTPM: 16.5
1839 Male, age 51, unknown 18.6
1796 Male, age 53, unknown 17.7
1895 Male, age 76, right hemisphere 17.6
2587 Male, age 74, left hemisphere 17.4
1995 Male, age 72, unknown 16.8
2664 Male, age 75, both hemispheres 16.7
2087 Female, age 72, unknown 16.1
1913 Female, age 42, unknown 15.2
2261 Male, age 18, unknown 15.2
2668 Female, age 75, unknown 14.0
Ventral tegmental area
nTPM: 16.7
2410 Female, age 72, unknown 18.2
1915 Female, age 42, unknown 17.6
2021 Male, age 53, unknown 16.9
2218 Male, age 76, both hemispheres 16.4
2223 Female, age 72, unknown 16.4
1942 Male, age 51, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.3
Samples: 139

Max nTPM: 26.1
Min nTPM: 10.9
Std nTPM: 2.5
Median nTPM: 14.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 26.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 21.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 21.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 20.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 20.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 19.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 19.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 19.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.0
FF:10158-103A5 76 years, female 46.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.3
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.6
Sample A Female 18.5
Sample B Female 12.6
Sample C Male 15.9
Sample D Male 14.2
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.5
Sample A Female 17.3
Sample B Female 13.5
Sample C Male 16.9
Sample D Male 17.2
Periaqueductal gray
nTPM: 14.5
Samples: 3

Max nTPM: 16.3
Min nTPM: 13.5
Sample B Female 13.6
Sample C Male 16.3
Sample D Male 13.5
Superior colliculi
nTPM: 17.7
Samples: 4

Max nTPM: 19.9
Min nTPM: 14.1
Sample A Female 19.9
Sample B Female 14.1
Sample C Male 19.0
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.2
Samples: 4

Max nTPM: 23.4
Min nTPM: 18.8
Sample A Male 23.4
Sample B Male 18.8
Sample C Female 21.1
Sample D Female 21.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.9
69353620 Antisense, RP_050412_02_D05, Mouse strain C57BL/6J (56 days, male) 9.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org