HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:24.0 nTPM
HPA Brain:50.8 nTPM
GTEx:24.0 nTPM
FANTOM5:68.0 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:64.1 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021453Antibody HPA045649
Glial cells Not detectedLow
Neuronal cells LowLow




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Hippocampus
nTPM: 47.4
1898 Male, age 80, left hemisphere 60.8
2621 Female, age 67, right hemisphere 55.3
1855 Male, age 76, left hemisphere 53.9
2148 Female, age 91, left hemisphere 41.7
2529 Female, age 94, left hemisphere 38.0
1911 Female, age 85, right hemisphere 34.9
Dentate gyrus
nTPM: 45.3
2531 Female, age 67, both hemispheres 49.3
2010 Male, age 76, both hemispheres 49.0
1927 Female, age 91, both hemispheres 47.0
2530 Female, age 94, left hemisphere 45.8
2246 Female, age 85, both hemispheres 42.8
2528 Male, age 74, both hemispheres 38.1
Entorhinal gyrus
nTPM: 47.2
2686 Male, age 75, right hemisphere 57.4
2613 Female, age 94, left hemisphere 47.5
2764 Male, age 80, right hemisphere 47.5
2117 Female, age 91, right hemisphere 44.2
1787 Male, age 76, left hemisphere 43.6
1938 Female, age 85, left hemisphere 42.8
Hippocampus, CA1
nTPM: 50.8
2749 Male, age 80, left hemisphere 76.4
1873 Female, age 85, both hemispheres 50.2
2045 Male, age 76, both hemispheres 46.4
2527 Male, age 74, both hemispheres 46.3
2082 Female, age 91, right hemisphere 34.6
Hippocampus, CA2
nTPM: 41.9
1892 Male, age 76, both hemispheres 60.1
1963 Male, age 80, left hemisphere 49.2
1940 Female, age 85, left hemisphere 37.9
2437 Female, age 94, left hemisphere 35.9
2113 Female, age 91, right hemisphere 35.4
2249 Male, age 74, both hemispheres 32.8
Hippocampus, CA3
nTPM: 49.2
2861 Female, age 67, both hemispheres 61.0
2137 Male, age 80, left hemisphere 56.0
2620 Female, age 94, left hemisphere 53.0
1867 Male, age 76, both hemispheres 47.9
1891 Female, age 85, both hemispheres 39.1
2436 Male, age 74, both hemispheres 38.0
Parahippocampal cortex
nTPM: 47.3
2622 Female, age 67, right hemisphere 63.9
1850 Male, age 80, both hemispheres 57.5
2692 Male, age 74, both hemispheres 49.3
2693 Female, age 94, both hemispheres 48.7
2245 Female, age 91, both hemispheres 48.6
2532 Female, age 72, left hemisphere 45.0
1933 Female, age 85, both hemispheres 43.0
1990 Female, age 91, right hemisphere 40.9
2250 Female, age 67, right hemisphere 39.1
2018 Male, age 76, both hemispheres 37.3
Perirhinal gyrus
nTPM: 50.8
1794 Male, age 80, right hemisphere 58.2
1847 Female, age 91, left hemisphere 55.2
2848 Male, age 76, right hemisphere 48.3
1841 Female, age 85, right hemisphere 46.3
2521 Female, age 94, right hemisphere 45.7
Subiculum
nTPM: 40.2
2619 Male, age 74, both hemispheres 49.1
1977 Female, age 85, both hemispheres 42.7
1901 Male, age 80, both hemispheres 42.4
2042 Male, age 76, both hemispheres 38.3
2729 Female, age 91, right hemisphere 36.5
2438 Female, age 94, left hemisphere 32.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.0
Samples: 197

Max nTPM: 40.4
Min nTPM: 13.6
Std nTPM: 5.0
Median nTPM: 23.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 40.4
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 38.3
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 37.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 37.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 35.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 35.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 35.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 34.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 33.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 33.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 33.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 68.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 68.0
FF:10169-103B7 60 years, female 78.9
FF:10153-102I9 76 years, female 57.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 74.6
Pig sample Sample description nTPM
Subiculum
nTPM: 70.3
Samples: 4

Max nTPM: 81.7
Min nTPM: 65.0
Sample A Female 81.7
Sample B Female 67.4
Sample C Male 67.0
Sample D Male 65.0
Dorsal hippocampus
nTPM: 74.6
Samples: 4

Max nTPM: 86.6
Min nTPM: 63.3
Sample A Female 86.6
Sample B Female 74.2
Sample C Male 74.3
Sample D Male 63.3
Entorhinal cortex
nTPM: 67.8
Samples: 4

Max nTPM: 72.4
Min nTPM: 60.7
Sample A Female 68.8
Sample B Female 72.4
Sample C Male 69.3
Sample D Male 60.7
Ventral hippocampus
nTPM: 71.7
Samples: 4

Max nTPM: 78.8
Min nTPM: 59.5
Sample A Female 76.2
Sample B Female 59.5
Sample C Male 78.8
Sample D Male 72.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 64.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.4
Samples: 4

Max nTPM: 70.5
Min nTPM: 58.2
Sample A Male 58.2
Sample B Male 61.9
Sample C Female 63.0
Sample D Female 70.5
Hippocampal formation
nTPM: 64.1
Samples: 4

Max nTPM: 70.3
Min nTPM: 59.5
Sample A Male 59.7
Sample B Male 67.0
Sample C Female 70.3
Sample D Female 59.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
68269688 Antisense, RP_041129_02_A09, Mouse strain C57BL/6J (56 days, male) 6.5
844 Antisense, RP_Baylor_102982, Mouse strain C57BL/6J (56 days, male) 0.0

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