MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.6 nTPM
HPA Brain:18.7 nTPM
GTEx:16.6 nTPM
FANTOM5:25.5 Scaled Tags Per Million
Pig:4.5 nTPM
Mouse:11.1 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 18.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.3
1870 Female, age 42, unknown 16.2
1827 Male, age 72, unknown 15.7
2411 Female, age 72, unknown 15.2
1833 Male, age 53, unknown 13.9
2019 Male, age 18, unknown 13.3
1830 Male, age 51, unknown 13.1
2219 Male, age 76, both hemispheres 12.8
2828 Female, age 72, unknown 11.9
2666 Male, age 74, left hemisphere 11.4
2586 Male, age 75, left hemisphere 9.6
Dorsal raphe nucleus
nTPM: 14.3
2750 Male, age 76, both hemispheres 17.2
2298 Female, age 72, unknown 15.5
2047 Male, age 72, unknown 14.1
1828 Male, age 53, unknown 13.5
2016 Female, age 72, unknown 11.0
Inferior colliculus
nTPM: 13.4
2097 Female, age 72, unknown 15.0
2849 Male, age 72, unknown 14.1
1848 Female, age 42, unknown 12.6
1890 Male, age 53, unknown 11.9
Median raphe nucleus
nTPM: 18.7
2220 Male, age 76, midline 18.7
Periaquaductal grey, anterior
nTPM: 14.0
1947 Male, age 18, unknown 16.5
1795 Male, age 51, unknown 13.0
2502 Female, age 75, unknown 12.3
Periaquaductal grey, dorsal
nTPM: 13.7
2850 Male, age 76, both hemispheres 18.6
1840 Male, age 53, unknown 12.6
1831 Male, age 72, unknown 12.3
2464 Female, age 72, unknown 11.4
Periaquaductal grey, lateral
nTPM: 12.7
2140 Male, age 76, both hemispheres 13.0
2272 Male, age 74, both hemispheres 12.6
2053 Male, age 18, unknown 12.4
Pretectal area
nTPM: 15.0
2007 Male, age 72, unknown 17.0
1815 Male, age 53, unknown 16.7
1816 Male, age 51, unknown 16.7
1817 Female, age 42, unknown 16.6
2667 Female, age 75, unknown 16.5
1944 Female, age 72, unknown 14.8
2224 Female, age 72, unknown 14.2
2407 Male, age 75, both hemispheres 14.1
2825 Male, age 18, unknown 13.4
2273 Male, age 74, both hemispheres 13.0
2316 Male, age 76, right hemisphere 12.4
Red nucleus
nTPM: 14.3
2725 Female, age 75, unknown 18.8
1821 Female, age 72, unknown 16.0
2823 Male, age 76, right hemisphere 15.1
1865 Male, age 51, unknown 14.7
1954 Female, age 42, unknown 14.7
2503 Female, age 72, unknown 14.1
1904 Male, age 53, unknown 13.7
2227 Male, age 72, unknown 13.4
2785 Male, age 18, unknown 13.2
2584 Male, age 75, left hemisphere 12.9
2769 Male, age 72, unknown 12.6
2588 Male, age 74, left hemisphere 12.2
Substantia nigra
nTPM: 15.3
2409 Female, age 72, unknown 21.0
1889 Female, age 72, unknown 17.3
1941 Male, age 53, unknown 16.7
2241 Male, age 72, unknown 16.6
1851 Male, age 51, unknown 15.4
1916 Female, age 42, unknown 15.2
2699 Male, age 18, unknown 13.7
2665 Male, age 74, both hemispheres 13.3
2583 Male, age 75, right hemisphere 13.1
2590 Female, age 75, unknown 11.1
Superior colliculus
nTPM: 13.6
1796 Male, age 53, unknown 15.5
1895 Male, age 76, right hemisphere 15.3
2261 Male, age 18, unknown 15.2
1913 Female, age 42, unknown 14.5
2668 Female, age 75, unknown 14.1
2087 Female, age 72, unknown 13.9
2587 Male, age 74, left hemisphere 12.5
1839 Male, age 51, unknown 12.3
1995 Male, age 72, unknown 11.3
2664 Male, age 75, both hemispheres 11.3
Ventral tegmental area
nTPM: 14.4
2218 Male, age 76, both hemispheres 17.4
2223 Female, age 72, unknown 15.4
1942 Male, age 51, unknown 14.2
2410 Female, age 72, unknown 13.8
1915 Female, age 42, unknown 13.1
2021 Male, age 53, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.6
Samples: 139

Max nTPM: 31.0
Min nTPM: 9.4
Std nTPM: 4.0
Median nTPM: 15.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 31.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 28.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 27.8
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 27.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 26.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 24.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 23.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 22.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.5
FF:10158-103A5 76 years, female 25.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.4
Samples: 4

Max nTPM: 6.0
Min nTPM: 3.2
Sample A Female 6.0
Sample B Female 4.0
Sample C Male 4.2
Sample D Male 3.2
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.1
Min nTPM: 3.9
Sample A Female 5.1
Sample B Female 4.9
Sample C Male 4.2
Sample D Male 3.9
Periaqueductal gray
nTPM: 4.1
Samples: 3

Max nTPM: 4.8
Min nTPM: 3.7
Sample B Female 3.7
Sample C Male 3.8
Sample D Male 4.8
Superior colliculi
nTPM: 4.4
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.2
Sample A Female 5.3
Sample B Female 3.2
Sample C Male 4.6
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 11.8
Min nTPM: 10.6
Sample A Male 10.7
Sample B Male 11.8
Sample C Female 10.6
Sample D Female 11.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68633318 Antisense, RP_050125_02_F09, Mouse strain C57BL/6J (56 days, male) 0.6

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