MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.2 nTPM
HPA Brain:50.9 nTPM
GTEx:29.2 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:13.9 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.9
2586 Male, age 75, left hemisphere 73.5
2666 Male, age 74, left hemisphere 56.7
1827 Male, age 72, unknown 52.3
2019 Male, age 18, unknown 50.5
2828 Female, age 72, unknown 48.6
2411 Female, age 72, unknown 47.6
1870 Female, age 42, unknown 46.7
1830 Male, age 51, unknown 45.0
1833 Male, age 53, unknown 44.1
2219 Male, age 76, both hemispheres 43.9
Dorsal raphe nucleus
nTPM: 45.2
2047 Male, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 47.7
1828 Male, age 53, unknown 44.4
2016 Female, age 72, unknown 43.1
2298 Female, age 72, unknown 42.9
Inferior colliculus
nTPM: 42.8
2849 Male, age 72, unknown 44.3
1848 Female, age 42, unknown 43.8
1890 Male, age 53, unknown 43.2
2097 Female, age 72, unknown 39.7
Median raphe nucleus
nTPM: 46.0
2220 Male, age 76, midline 46.0
Periaquaductal grey, anterior
nTPM: 46.7
2502 Female, age 75, unknown 51.0
1947 Male, age 18, unknown 46.4
1795 Male, age 51, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 41.0
1840 Male, age 53, unknown 44.1
1831 Male, age 72, unknown 43.0
2464 Female, age 72, unknown 42.8
2850 Male, age 76, both hemispheres 34.0
Periaquaductal grey, lateral
nTPM: 38.6
2053 Male, age 18, unknown 42.8
2140 Male, age 76, both hemispheres 38.7
2272 Male, age 74, both hemispheres 34.3
Pretectal area
nTPM: 45.6
2407 Male, age 75, both hemispheres 52.3
1816 Male, age 51, unknown 50.1
2007 Male, age 72, unknown 49.0
1815 Male, age 53, unknown 47.7
2667 Female, age 75, unknown 47.3
2825 Male, age 18, unknown 47.0
1817 Female, age 42, unknown 46.9
2316 Male, age 76, right hemisphere 45.1
1944 Female, age 72, unknown 43.3
2224 Female, age 72, unknown 39.6
2273 Male, age 74, both hemispheres 33.7
Red nucleus
nTPM: 50.8
2584 Male, age 75, left hemisphere 60.2
2588 Male, age 74, left hemisphere 57.3
1904 Male, age 53, unknown 53.2
2769 Male, age 72, unknown 52.7
2823 Male, age 76, right hemisphere 50.9
1821 Female, age 72, unknown 50.5
2503 Female, age 72, unknown 50.2
2227 Male, age 72, unknown 49.4
2785 Male, age 18, unknown 47.9
2725 Female, age 75, unknown 47.3
1865 Male, age 51, unknown 46.0
1954 Female, age 42, unknown 44.2
Substantia nigra
nTPM: 46.3
2665 Male, age 74, both hemispheres 52.0
1851 Male, age 51, unknown 51.0
2583 Male, age 75, right hemisphere 50.7
1916 Female, age 42, unknown 50.6
1941 Male, age 53, unknown 46.3
2590 Female, age 75, unknown 45.3
1889 Female, age 72, unknown 44.9
2699 Male, age 18, unknown 43.4
2409 Female, age 72, unknown 42.3
2241 Male, age 72, unknown 36.7
Superior colliculus
nTPM: 47.5
2664 Male, age 75, both hemispheres 63.6
1839 Male, age 51, unknown 48.6
1895 Male, age 76, right hemisphere 46.9
2587 Male, age 74, left hemisphere 46.7
2261 Male, age 18, unknown 46.0
1913 Female, age 42, unknown 45.4
2668 Female, age 75, unknown 45.1
1796 Male, age 53, unknown 45.0
1995 Male, age 72, unknown 44.7
2087 Female, age 72, unknown 42.9
Ventral tegmental area
nTPM: 43.5
1942 Male, age 51, unknown 46.4
2223 Female, age 72, unknown 45.3
1915 Female, age 42, unknown 44.2
2021 Male, age 53, unknown 43.6
2410 Female, age 72, unknown 41.3
2218 Male, age 76, both hemispheres 40.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.2
Samples: 139

Max nTPM: 70.5
Min nTPM: 18.9
Std nTPM: 7.3
Median nTPM: 28.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 70.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 56.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 49.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 44.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 44.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 43.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 43.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 42.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 41.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 41.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 40.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 34.0
Min nTPM: 22.5
Sample A Female 30.6
Sample B Female 22.5
Sample C Male 34.0
Sample D Male 23.0
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 29.8
Min nTPM: 22.8
Sample A Female 29.8
Sample B Female 23.8
Sample C Male 23.9
Sample D Male 22.8
Periaqueductal gray
nTPM: 21.5
Samples: 3

Max nTPM: 24.1
Min nTPM: 19.8
Sample B Female 20.7
Sample C Male 24.1
Sample D Male 19.8
Superior colliculi
nTPM: 25.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 21.4
Sample A Female 28.8
Sample B Female 21.4
Sample C Male 24.2
Sample D Male 26.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.0
Sample A Male 13.6
Sample B Male 13.6
Sample C Female 15.4
Sample D Female 13.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
69015518 Antisense, RP_050315_01_B06, Mouse strain C57BL/6J (56 days, male) 6.4

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