HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:11.4 nTPM
HPA Brain:51.1 nTPM
GTEx:11.4 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:47.2 nTPM
Mouse:35.6 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043551
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 51.1
Sample id Sample description nTPM
Hippocampus
nTPM: 46.7
2621 Female, age 67, right hemisphere 52.5
1898 Male, age 80, left hemisphere 48.6
2529 Female, age 94, left hemisphere 46.1
1911 Female, age 85, right hemisphere 44.6
2148 Female, age 91, left hemisphere 44.4
1855 Male, age 76, left hemisphere 44.1
Dentate gyrus
nTPM: 46.8
2246 Female, age 85, both hemispheres 51.9
2530 Female, age 94, left hemisphere 50.4
1927 Female, age 91, both hemispheres 47.9
2531 Female, age 67, both hemispheres 44.5
2010 Male, age 76, both hemispheres 43.0
2528 Male, age 74, both hemispheres 43.0
Entorhinal gyrus
nTPM: 48.7
1938 Female, age 85, left hemisphere 55.5
2686 Male, age 75, right hemisphere 48.8
1787 Male, age 76, left hemisphere 47.8
2117 Female, age 91, right hemisphere 46.9
2764 Male, age 80, right hemisphere 46.9
2613 Female, age 94, left hemisphere 46.6
Hippocampus, CA1
nTPM: 44.0
2045 Male, age 76, both hemispheres 48.7
1873 Female, age 85, both hemispheres 45.1
2749 Male, age 80, left hemisphere 43.5
2527 Male, age 74, both hemispheres 42.3
2082 Female, age 91, right hemisphere 40.5
Hippocampus, CA2
nTPM: 44.9
1892 Male, age 76, both hemispheres 52.2
2437 Female, age 94, left hemisphere 48.7
1963 Male, age 80, left hemisphere 44.6
1940 Female, age 85, left hemisphere 42.6
2113 Female, age 91, right hemisphere 41.1
2249 Male, age 74, both hemispheres 40.0
Hippocampus, CA3
nTPM: 47.8
2861 Female, age 67, both hemispheres 54.2
1867 Male, age 76, both hemispheres 48.9
1891 Female, age 85, both hemispheres 48.3
2436 Male, age 74, both hemispheres 48.1
2620 Female, age 94, left hemisphere 45.8
2137 Male, age 80, left hemisphere 41.5
Parahippocampal cortex
nTPM: 47.6
1850 Male, age 80, both hemispheres 55.2
2532 Female, age 72, left hemisphere 53.6
1990 Female, age 91, right hemisphere 50.0
2250 Female, age 67, right hemisphere 49.2
1933 Female, age 85, both hemispheres 48.2
2693 Female, age 94, both hemispheres 46.4
2622 Female, age 67, right hemisphere 44.7
2692 Male, age 74, both hemispheres 44.2
2018 Male, age 76, both hemispheres 42.8
2245 Female, age 91, both hemispheres 42.0
Perirhinal gyrus
nTPM: 51.1
1841 Female, age 85, right hemisphere 59.6
1847 Female, age 91, left hemisphere 51.8
1794 Male, age 80, right hemisphere 50.2
2848 Male, age 76, right hemisphere 49.3
2521 Female, age 94, right hemisphere 44.8
Subiculum
nTPM: 47.8
2438 Female, age 94, left hemisphere 54.2
1901 Male, age 80, both hemispheres 48.2
2619 Male, age 74, both hemispheres 48.1
2042 Male, age 76, both hemispheres 47.3
1977 Female, age 85, both hemispheres 46.1
2729 Female, age 91, right hemisphere 43.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.4
Samples: 197

Max nTPM: 18.2
Min nTPM: 6.7
Std nTPM: 2.2
Median nTPM: 11.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 18.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 17.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 17.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 16.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 16.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 16.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 15.9
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 15.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 15.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 15.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 15.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.0
FF:10153-102I9 76 years, female 68.7
FF:10169-103B7 60 years, female 63.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.2
Pig sample Sample description nTPM
Subiculum
nTPM: 47.2
Samples: 4

Max nTPM: 55.0
Min nTPM: 43.6
Sample A Female 55.0
Sample B Female 43.6
Sample C Male 43.9
Sample D Male 46.4
Dorsal hippocampus
nTPM: 44.7
Samples: 4

Max nTPM: 51.5
Min nTPM: 37.6
Sample A Female 51.5
Sample B Female 43.7
Sample C Male 45.8
Sample D Male 37.6
Entorhinal cortex
nTPM: 45.9
Samples: 4

Max nTPM: 49.4
Min nTPM: 41.3
Sample A Female 49.3
Sample B Female 43.6
Sample C Male 49.4
Sample D Male 41.3
Ventral hippocampus
nTPM: 42.0
Samples: 4

Max nTPM: 45.8
Min nTPM: 36.1
Sample A Female 45.8
Sample B Female 36.1
Sample C Male 44.6
Sample D Male 41.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 35.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 34.7
Samples: 4

Max nTPM: 41.3
Min nTPM: 30.9
Sample A Male 33.3
Sample B Male 30.9
Sample C Female 33.3
Sample D Female 41.3
Hippocampal formation
nTPM: 35.6
Samples: 4

Max nTPM: 36.6
Min nTPM: 34.5
Sample A Male 34.5
Sample B Male 36.6
Sample C Female 36.2
Sample D Female 35.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
564764 Antisense, RP_040826_01_D10, Mouse strain C57BL/6J (56 days, male) 2.5

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