MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.8 nTPM
HPA Brain:25.8 nTPM
GTEx:56.8 nTPM
FANTOM5:45.8 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:151.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.3
2586 Male, age 75, left hemisphere 26.3
2019 Male, age 18, unknown 23.7
1870 Female, age 42, unknown 23.1
1827 Male, age 72, unknown 22.7
2411 Female, age 72, unknown 22.7
1833 Male, age 53, unknown 21.8
1830 Male, age 51, unknown 20.3
2828 Female, age 72, unknown 19.2
2219 Male, age 76, both hemispheres 16.5
2666 Male, age 74, left hemisphere 16.4
Dorsal raphe nucleus
nTPM: 19.7
2750 Male, age 76, both hemispheres 22.6
1828 Male, age 53, unknown 21.1
2298 Female, age 72, unknown 20.0
2016 Female, age 72, unknown 17.6
2047 Male, age 72, unknown 17.4
Inferior colliculus
nTPM: 19.7
2097 Female, age 72, unknown 21.5
1848 Female, age 42, unknown 21.0
1890 Male, age 53, unknown 19.6
2849 Male, age 72, unknown 16.6
Median raphe nucleus
nTPM: 19.2
2220 Male, age 76, midline 19.2
Periaquaductal grey, anterior
nTPM: 22.3
1947 Male, age 18, unknown 24.0
2502 Female, age 75, unknown 23.3
1795 Male, age 51, unknown 19.5
Periaquaductal grey, dorsal
nTPM: 16.8
1831 Male, age 72, unknown 19.4
2850 Male, age 76, both hemispheres 17.8
1840 Male, age 53, unknown 16.6
2464 Female, age 72, unknown 13.5
Periaquaductal grey, lateral
nTPM: 17.1
2272 Male, age 74, both hemispheres 19.5
2053 Male, age 18, unknown 16.8
2140 Male, age 76, both hemispheres 15.0
Pretectal area
nTPM: 21.6
2007 Male, age 72, unknown 28.2
1816 Male, age 51, unknown 26.3
1815 Male, age 53, unknown 25.0
1817 Female, age 42, unknown 24.2
2825 Male, age 18, unknown 21.7
1944 Female, age 72, unknown 21.5
2667 Female, age 75, unknown 20.6
2273 Male, age 74, both hemispheres 20.4
2407 Male, age 75, both hemispheres 18.3
2224 Female, age 72, unknown 16.3
2316 Male, age 76, right hemisphere 14.7
Red nucleus
nTPM: 25.8
1821 Female, age 72, unknown 28.6
2769 Male, age 72, unknown 27.9
2785 Male, age 18, unknown 27.0
2227 Male, age 72, unknown 26.7
1954 Female, age 42, unknown 26.6
2503 Female, age 72, unknown 25.9
2584 Male, age 75, left hemisphere 25.5
2725 Female, age 75, unknown 25.1
1865 Male, age 51, unknown 24.8
1904 Male, age 53, unknown 24.7
2823 Male, age 76, right hemisphere 23.9
2588 Male, age 74, left hemisphere 22.5
Substantia nigra
nTPM: 23.7
2665 Male, age 74, both hemispheres 29.1
1916 Female, age 42, unknown 28.0
1889 Female, age 72, unknown 26.5
1851 Male, age 51, unknown 26.0
1941 Male, age 53, unknown 23.9
2409 Female, age 72, unknown 23.8
2583 Male, age 75, right hemisphere 23.1
2699 Male, age 18, unknown 20.6
2590 Female, age 75, unknown 19.8
2241 Male, age 72, unknown 16.3
Superior colliculus
nTPM: 21.3
2668 Female, age 75, unknown 25.1
1913 Female, age 42, unknown 23.5
2087 Female, age 72, unknown 22.9
1895 Male, age 76, right hemisphere 21.5
1995 Male, age 72, unknown 21.5
1839 Male, age 51, unknown 20.5
2587 Male, age 74, left hemisphere 20.1
2664 Male, age 75, both hemispheres 20.0
1796 Male, age 53, unknown 19.2
2261 Male, age 18, unknown 18.5
Ventral tegmental area
nTPM: 20.4
2223 Female, age 72, unknown 23.3
2410 Female, age 72, unknown 22.6
1915 Female, age 42, unknown 22.5
1942 Male, age 51, unknown 18.5
2218 Male, age 76, both hemispheres 17.8
2021 Male, age 53, unknown 17.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.8
Samples: 139

Max nTPM: 92.7
Min nTPM: 24.0
Std nTPM: 12.1
Median nTPM: 55.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 92.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 90.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 87.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 85.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 83.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 82.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 79.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 79.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 78.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 45.8
FF:10158-103A5 76 years, female 45.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 75.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 71.1
Samples: 4

Max nTPM: 99.8
Min nTPM: 57.7
Sample A Female 99.8
Sample B Female 58.7
Sample C Male 68.2
Sample D Male 57.7
Midbrain
nTPM: 75.4
Samples: 4

Max nTPM: 115.1
Min nTPM: 58.2
Sample A Female 115.1
Sample B Female 68.5
Sample C Male 59.9
Sample D Male 58.2
Periaqueductal gray
nTPM: 54.7
Samples: 3

Max nTPM: 59.8
Min nTPM: 50.9
Sample B Female 53.5
Sample C Male 59.8
Sample D Male 50.9
Superior colliculi
nTPM: 70.1
Samples: 4

Max nTPM: 92.4
Min nTPM: 54.1
Sample A Female 92.4
Sample B Female 54.1
Sample C Male 65.4
Sample D Male 68.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 151.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.8
Samples: 4

Max nTPM: 164.7
Min nTPM: 140.5
Sample A Male 164.7
Sample B Male 141.1
Sample C Female 140.5
Sample D Female 160.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
678683 Antisense, RP_040914_02_D02, Mouse strain C57BL/6J (56 days, male) 1.0

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