MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1200.2 nTPM
HPA Brain:248.1 nTPM
GTEx:1200.2 nTPM
FANTOM5:100.4 Scaled Tags Per Million
Pig:631.9 nTPM
Mouse:645.1 nTPM
Allen mouse:13.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 248.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 206.5
2666 Male, age 74, left hemisphere 278.3
1870 Female, age 42, unknown 262.4
2586 Male, age 75, left hemisphere 230.9
1833 Male, age 53, unknown 206.5
1830 Male, age 51, unknown 200.2
2828 Female, age 72, unknown 197.8
1827 Male, age 72, unknown 187.9
2219 Male, age 76, both hemispheres 181.2
2019 Male, age 18, unknown 175.7
2411 Female, age 72, unknown 144.4
Dorsal raphe nucleus
nTPM: 195.0
2016 Female, age 72, unknown 222.3
1828 Male, age 53, unknown 203.3
2298 Female, age 72, unknown 193.6
2750 Male, age 76, both hemispheres 190.3
2047 Male, age 72, unknown 165.6
Inferior colliculus
nTPM: 216.4
2849 Male, age 72, unknown 258.9
1890 Male, age 53, unknown 225.3
1848 Female, age 42, unknown 195.3
2097 Female, age 72, unknown 186.0
Median raphe nucleus
nTPM: 226.2
2220 Male, age 76, midline 226.2
Periaquaductal grey, anterior
nTPM: 196.8
2502 Female, age 75, unknown 233.1
1947 Male, age 18, unknown 179.4
1795 Male, age 51, unknown 177.8
Periaquaductal grey, dorsal
nTPM: 202.3
2850 Male, age 76, both hemispheres 248.9
1831 Male, age 72, unknown 202.5
1840 Male, age 53, unknown 181.0
2464 Female, age 72, unknown 176.7
Periaquaductal grey, lateral
nTPM: 190.3
2053 Male, age 18, unknown 220.4
2140 Male, age 76, both hemispheres 198.3
2272 Male, age 74, both hemispheres 152.2
Pretectal area
nTPM: 187.2
2825 Male, age 18, unknown 212.2
1817 Female, age 42, unknown 208.0
1815 Male, age 53, unknown 204.4
2224 Female, age 72, unknown 195.1
1944 Female, age 72, unknown 189.7
1816 Male, age 51, unknown 189.3
2407 Male, age 75, both hemispheres 180.6
2316 Male, age 76, right hemisphere 180.5
2007 Male, age 72, unknown 177.4
2667 Female, age 75, unknown 167.9
2273 Male, age 74, both hemispheres 153.8
Red nucleus
nTPM: 248.1
2503 Female, age 72, unknown 324.0
1865 Male, age 51, unknown 305.4
1821 Female, age 72, unknown 279.4
1904 Male, age 53, unknown 266.9
2725 Female, age 75, unknown 261.7
2588 Male, age 74, left hemisphere 237.9
2227 Male, age 72, unknown 224.8
2584 Male, age 75, left hemisphere 220.3
2769 Male, age 72, unknown 218.8
1954 Female, age 42, unknown 214.8
2785 Male, age 18, unknown 213.7
2823 Male, age 76, right hemisphere 209.1
Substantia nigra
nTPM: 236.6
2699 Male, age 18, unknown 329.9
2665 Male, age 74, both hemispheres 279.6
2241 Male, age 72, unknown 270.5
2409 Female, age 72, unknown 258.3
1851 Male, age 51, unknown 253.1
1916 Female, age 42, unknown 217.5
1889 Female, age 72, unknown 211.6
2590 Female, age 75, unknown 200.2
1941 Male, age 53, unknown 188.2
2583 Male, age 75, right hemisphere 157.0
Superior colliculus
nTPM: 214.9
2587 Male, age 74, left hemisphere 297.4
1913 Female, age 42, unknown 279.8
1995 Male, age 72, unknown 240.8
2668 Female, age 75, unknown 212.0
1796 Male, age 53, unknown 209.6
1895 Male, age 76, right hemisphere 203.4
2664 Male, age 75, both hemispheres 201.8
1839 Male, age 51, unknown 200.8
2261 Male, age 18, unknown 159.7
2087 Female, age 72, unknown 143.8
Ventral tegmental area
nTPM: 223.3
2223 Female, age 72, unknown 265.1
1915 Female, age 42, unknown 239.3
2021 Male, age 53, unknown 227.4
2218 Male, age 76, both hemispheres 220.5
2410 Female, age 72, unknown 200.5
1942 Male, age 51, unknown 187.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1200.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1200.2
Samples: 139

Max nTPM: 3585.1
Min nTPM: 447.9
Std nTPM: 482.3
Median nTPM: 1111.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 3585.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2996.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2856.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2422.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2405.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2062.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 2044.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 2022.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1945.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1924.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 1881.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 100.4
FF:10158-103A5 76 years, female 100.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 631.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 631.9
Samples: 4

Max nTPM: 763.1
Min nTPM: 528.4
Sample A Female 763.1
Sample B Female 662.9
Sample C Male 528.4
Sample D Male 573.1
Midbrain
nTPM: 621.0
Samples: 4

Max nTPM: 887.4
Min nTPM: 438.6
Sample A Female 887.4
Sample B Female 669.7
Sample C Male 488.1
Sample D Male 438.6
Periaqueductal gray
nTPM: 511.5
Samples: 3

Max nTPM: 528.8
Min nTPM: 481.9
Sample B Female 528.8
Sample C Male 523.8
Sample D Male 481.9
Superior colliculi
nTPM: 611.2
Samples: 4

Max nTPM: 691.9
Min nTPM: 555.3
Sample A Female 691.9
Sample B Female 621.5
Sample C Male 576.1
Sample D Male 555.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 645.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 645.1
Samples: 4

Max nTPM: 706.1
Min nTPM: 560.6
Sample A Male 706.1
Sample B Male 636.7
Sample C Female 560.6
Sample D Female 676.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
276067 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 13.4
199144 Antisense, RP_040609_01_B11, Mouse strain C57BL/6J (56 days, male) 8.7

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