MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.2 nTPM
HPA Brain:33.7 nTPM
GTEx:20.2 nTPM
FANTOM5:44.5 Scaled Tags Per Million
Pig:18.3 nTPM
Mouse:28.4 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.3
2586 Male, age 75, left hemisphere 44.0
2666 Male, age 74, left hemisphere 36.4
1827 Male, age 72, unknown 36.2
2828 Female, age 72, unknown 32.5
2019 Male, age 18, unknown 28.7
1870 Female, age 42, unknown 26.0
2411 Female, age 72, unknown 26.0
1833 Male, age 53, unknown 25.8
2219 Male, age 76, both hemispheres 23.8
1830 Male, age 51, unknown 23.2
Dorsal raphe nucleus
nTPM: 26.7
2298 Female, age 72, unknown 28.9
1828 Male, age 53, unknown 27.4
2750 Male, age 76, both hemispheres 26.5
2047 Male, age 72, unknown 26.2
2016 Female, age 72, unknown 24.8
Inferior colliculus
nTPM: 27.9
2097 Female, age 72, unknown 29.5
1890 Male, age 53, unknown 28.8
1848 Female, age 42, unknown 27.6
2849 Male, age 72, unknown 25.6
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Periaquaductal grey, anterior
nTPM: 32.8
2502 Female, age 75, unknown 33.0
1795 Male, age 51, unknown 32.8
1947 Male, age 18, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 26.1
1840 Male, age 53, unknown 27.8
1831 Male, age 72, unknown 26.8
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 23.3
Periaquaductal grey, lateral
nTPM: 25.5
2053 Male, age 18, unknown 28.5
2140 Male, age 76, both hemispheres 24.2
2272 Male, age 74, both hemispheres 23.9
Pretectal area
nTPM: 33.7
1816 Male, age 51, unknown 52.9
2007 Male, age 72, unknown 41.9
1944 Female, age 72, unknown 40.0
1817 Female, age 42, unknown 39.9
1815 Male, age 53, unknown 39.2
2667 Female, age 75, unknown 29.1
2407 Male, age 75, both hemispheres 28.6
2825 Male, age 18, unknown 26.4
2224 Female, age 72, unknown 24.9
2316 Male, age 76, right hemisphere 24.8
2273 Male, age 74, both hemispheres 23.3
Red nucleus
nTPM: 26.8
2584 Male, age 75, left hemisphere 31.4
2588 Male, age 74, left hemisphere 31.3
2785 Male, age 18, unknown 30.2
1954 Female, age 42, unknown 27.3
1821 Female, age 72, unknown 27.2
2503 Female, age 72, unknown 26.3
2227 Male, age 72, unknown 25.9
2725 Female, age 75, unknown 25.7
1865 Male, age 51, unknown 24.3
1904 Male, age 53, unknown 24.2
2769 Male, age 72, unknown 24.1
2823 Male, age 76, right hemisphere 23.2
Substantia nigra
nTPM: 29.0
2583 Male, age 75, right hemisphere 33.7
2665 Male, age 74, both hemispheres 33.7
1889 Female, age 72, unknown 33.2
1916 Female, age 42, unknown 31.6
1851 Male, age 51, unknown 30.5
2590 Female, age 75, unknown 27.4
1941 Male, age 53, unknown 26.4
2241 Male, age 72, unknown 26.1
2409 Female, age 72, unknown 23.9
2699 Male, age 18, unknown 23.0
Superior colliculus
nTPM: 31.7
2664 Male, age 75, both hemispheres 42.4
2261 Male, age 18, unknown 39.0
2668 Female, age 75, unknown 37.7
2087 Female, age 72, unknown 36.4
1796 Male, age 53, unknown 31.9
1995 Male, age 72, unknown 26.5
1913 Female, age 42, unknown 26.3
2587 Male, age 74, left hemisphere 26.0
1839 Male, age 51, unknown 25.9
1895 Male, age 76, right hemisphere 24.6
Ventral tegmental area
nTPM: 25.5
2410 Female, age 72, unknown 27.0
2218 Male, age 76, both hemispheres 26.8
1915 Female, age 42, unknown 26.2
2021 Male, age 53, unknown 25.1
1942 Male, age 51, unknown 24.7
2223 Female, age 72, unknown 23.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.2
Samples: 139

Max nTPM: 41.0
Min nTPM: 13.1
Std nTPM: 3.2
Median nTPM: 19.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 25.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 25.4
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 25.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 25.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 24.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 24.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 24.5
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 24.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.5
FF:10158-103A5 76 years, female 44.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.9
Samples: 4

Max nTPM: 19.5
Min nTPM: 13.5
Sample A Female 16.3
Sample B Female 13.5
Sample C Male 19.5
Sample D Male 14.4
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 14.0
Sample A Female 14.6
Sample B Female 14.0
Sample C Male 24.2
Sample D Male 20.5
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 15.1
Min nTPM: 13.7
Sample B Female 13.7
Sample C Male 15.1
Sample D Male 13.9
Superior colliculi
nTPM: 18.3
Samples: 4

Max nTPM: 21.3
Min nTPM: 15.9
Sample A Female 15.9
Sample B Female 17.3
Sample C Male 21.3
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.4
Samples: 4

Max nTPM: 32.2
Min nTPM: 26.0
Sample A Male 26.0
Sample B Male 27.7
Sample C Female 32.2
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
532672 Antisense, RP_040825_01_C07, Mouse strain C57BL/6J (56 days, male) 1.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org