MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.4 nTPM
HPA Brain:20.6 nTPM
GTEx:8.4 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:16.6 nTPM
Mouse:6.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.3
1827 Male, age 72, unknown 21.3
2411 Female, age 72, unknown 20.8
2586 Male, age 75, left hemisphere 20.6
2828 Female, age 72, unknown 20.0
1830 Male, age 51, unknown 19.4
2219 Male, age 76, both hemispheres 19.3
1833 Male, age 53, unknown 18.6
2019 Male, age 18, unknown 18.5
1870 Female, age 42, unknown 18.0
2666 Male, age 74, left hemisphere 16.7
Dorsal raphe nucleus
nTPM: 19.1
2298 Female, age 72, unknown 21.2
2750 Male, age 76, both hemispheres 20.5
2047 Male, age 72, unknown 18.5
2016 Female, age 72, unknown 18.3
1828 Male, age 53, unknown 16.8
Inferior colliculus
nTPM: 18.5
2097 Female, age 72, unknown 21.9
1848 Female, age 42, unknown 18.3
2849 Male, age 72, unknown 17.3
1890 Male, age 53, unknown 16.5
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Periaquaductal grey, anterior
nTPM: 20.2
1947 Male, age 18, unknown 20.8
2502 Female, age 75, unknown 20.8
1795 Male, age 51, unknown 19.1
Periaquaductal grey, dorsal
nTPM: 19.2
2464 Female, age 72, unknown 20.1
1840 Male, age 53, unknown 19.4
1831 Male, age 72, unknown 19.0
2850 Male, age 76, both hemispheres 18.3
Periaquaductal grey, lateral
nTPM: 20.2
2140 Male, age 76, both hemispheres 22.3
2272 Male, age 74, both hemispheres 20.7
2053 Male, age 18, unknown 17.7
Pretectal area
nTPM: 20.2
2007 Male, age 72, unknown 22.7
2273 Male, age 74, both hemispheres 21.5
1815 Male, age 53, unknown 21.3
2224 Female, age 72, unknown 21.0
2825 Male, age 18, unknown 20.9
1817 Female, age 42, unknown 20.5
1816 Male, age 51, unknown 20.3
2407 Male, age 75, both hemispheres 20.2
2667 Female, age 75, unknown 18.7
2316 Male, age 76, right hemisphere 17.8
1944 Female, age 72, unknown 17.2
Red nucleus
nTPM: 19.2
2769 Male, age 72, unknown 22.3
1904 Male, age 53, unknown 21.6
2588 Male, age 74, left hemisphere 21.0
1865 Male, age 51, unknown 19.5
2227 Male, age 72, unknown 18.9
2584 Male, age 75, left hemisphere 18.6
2725 Female, age 75, unknown 18.6
1821 Female, age 72, unknown 18.5
2785 Male, age 18, unknown 18.4
1954 Female, age 42, unknown 18.3
2503 Female, age 72, unknown 17.7
2823 Male, age 76, right hemisphere 16.9
Substantia nigra
nTPM: 18.9
1916 Female, age 42, unknown 23.5
1851 Male, age 51, unknown 20.5
2583 Male, age 75, right hemisphere 20.5
2590 Female, age 75, unknown 19.8
2699 Male, age 18, unknown 19.1
1941 Male, age 53, unknown 18.1
1889 Female, age 72, unknown 18.0
2665 Male, age 74, both hemispheres 17.1
2409 Female, age 72, unknown 17.0
2241 Male, age 72, unknown 15.4
Superior colliculus
nTPM: 19.7
1796 Male, age 53, unknown 23.6
2261 Male, age 18, unknown 22.3
1913 Female, age 42, unknown 20.5
1839 Male, age 51, unknown 20.0
2668 Female, age 75, unknown 20.0
2087 Female, age 72, unknown 19.3
2664 Male, age 75, both hemispheres 18.6
1995 Male, age 72, unknown 18.2
1895 Male, age 76, right hemisphere 17.3
2587 Male, age 74, left hemisphere 16.8
Ventral tegmental area
nTPM: 20.6
2410 Female, age 72, unknown 22.7
1915 Female, age 42, unknown 21.7
2218 Male, age 76, both hemispheres 21.6
2223 Female, age 72, unknown 19.5
2021 Male, age 53, unknown 19.0
1942 Male, age 51, unknown 18.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.4
Samples: 139

Max nTPM: 14.0
Min nTPM: 4.7
Std nTPM: 1.6
Median nTPM: 8.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 14.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 12.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 12.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 11.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 11.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 11.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 11.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 11.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 10.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 10.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 10.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.9
FF:10158-103A5 76 years, female 31.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.6
Samples: 4

Max nTPM: 21.0
Min nTPM: 13.1
Sample A Female 21.0
Sample B Female 14.0
Sample C Male 18.3
Sample D Male 13.1
Midbrain
nTPM: 14.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 13.2
Sample A Female 16.9
Sample B Female 13.2
Sample C Male 14.8
Sample D Male 13.4
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.0
Min nTPM: 12.5
Sample B Female 12.8
Sample C Male 15.0
Sample D Male 12.5
Superior colliculi
nTPM: 13.1
Samples: 4

Max nTPM: 16.1
Min nTPM: 11.4
Sample A Female 16.1
Sample B Female 11.4
Sample C Male 12.1
Sample D Male 12.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.9
Samples: 4

Max nTPM: 7.4
Min nTPM: 6.1
Sample A Male 7.3
Sample B Male 6.8
Sample C Female 6.1
Sample D Female 7.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68637927 Antisense, RP_050126_01_H08, Mouse strain C57BL/6J (56 days, male) 0.1

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