BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:20.9 nTPM
HPA Brain:53.7 nTPM
GTEx:20.9 nTPM
FANTOM5:94.7 Scaled Tags Per Million
Pig:24.0 nTPM
Mouse:24.9 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA031630
Glial cells Medium
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 53.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
2288 Male, age 75, left hemisphere 39.7
2846 Female, age 79, unknown 35.4
2481 Female, age 94, left hemisphere 34.2
2290 Female, age 72, unknown 33.3
1781 Male, age 74, unknown 32.2
1854 Male, age 80, left hemisphere 31.7
2289 Male, age 61, right hemisphere 30.7
1857 Female, age 85, left hemisphere 30.6
Globus pallidus, externus
nTPM: 53.7
2567 Female, age 72, unknown 59.1
1996 Male, age 80, right hemisphere 55.4
2772 Female, age 79, unknown 53.2
2646 Male, age 61, right hemisphere 51.9
2395 Male, age 75, both hemispheres 48.7
Globus pallidus, internus
nTPM: 53.1
2111 Female, age 85, right hemisphere 61.0
2778 Female, age 91, both hemispheres 56.2
2483 Female, age 94, right hemisphere 55.8
2566 Female, age 72, unknown 54.1
2287 Male, age 75, right hemisphere 52.8
1818 Male, age 74, unknown 46.0
2037 Male, age 80, right hemisphere 45.7
Nucleus accumbens
nTPM: 35.6
2391 Female, age 94, left hemisphere 44.5
2698 Female, age 72, unknown 39.6
2732 Male, age 80, right hemisphere 38.5
2286 Male, age 75, left hemisphere 36.7
1783 Male, age 74, unknown 33.9
1806 Female, age 85, left hemisphere 33.8
2824 Male, age 61, right hemisphere 30.5
1856 Female, age 91, right hemisphere 27.6
Nucleus basalis of Meynert
nTPM: 41.2
2569 Male, age 61, both hemispheres 58.5
2821 Male, age 75, both hemispheres 37.5
2484 Female, age 94, left hemisphere 37.4
2393 Male, age 80, right hemisphere 31.5
Nucleus of the diagonal band
nTPM: 29.5
2029 Male, age 61, right hemisphere 32.2
1812 Female, age 91, both hemispheres 30.2
1979 Male, age 74, unknown 29.5
2775 Male, age 80, right hemisphere 29.1
2195 Female, age 85, both hemispheres 26.6
Putamen
nTPM: 36.2
2647 Male, age 75, left hemisphere 45.2
2482 Female, age 94, left hemisphere 38.8
2489 Female, age 72, unknown 37.9
1829 Male, age 74, unknown 37.8
2466 Female, age 79, unknown 34.2
1937 Female, age 91, right hemisphere 32.5
1838 Male, age 80, right hemisphere 27.0
Septal nuclei
nTPM: 31.9
2394 Male, age 61, left hemisphere 37.7
2031 Female, age 72, unknown 33.1
2199 Male, age 80, right hemisphere 32.2
2059 Female, age 85, both hemispheres 32.1
2009 Female, age 91, both hemispheres 30.3
2629 Female, age 94, right hemisphere 29.3
1960 Male, age 74, unknown 28.8
Stria terminalis, bed nucleus
nTPM: 29.8
1974 Female, age 91, both hemispheres 32.4
2201 Male, age 74, unknown 29.9
2486 Female, age 94, both hemispheres 27.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 17.5
Samples: 246

Max nTPM: 43.2
Min nTPM: 8.4
Std nTPM: 5.3
Median nTPM: 16.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 43.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 40.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 34.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 33.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 32.4
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 30.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 29.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 29.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 29.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 28.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 28.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.0
Samples: 246

Max nTPM: 51.9
Min nTPM: 7.8
Std nTPM: 5.3
Median nTPM: 13.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 51.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 37.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 36.4
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 35.5
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 33.2
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 30.8
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 27.5
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 27.2
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 25.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 25.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 25.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.9
Samples: 205

Max nTPM: 53.7
Min nTPM: 9.1
Std nTPM: 7.4
Median nTPM: 19.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 53.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 50.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 49.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 49.2
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 44.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 43.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 39.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 36.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 36.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 33.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 32.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.1
FF:10164-103B2 76 years, female 45.1
Nucleus accumbens
Scaled Tags Per Million: 50.3
FF:10037-101F1 23-56 years, mixed 50.3
Putamen
Scaled Tags Per Million: 47.1
FF:10176-103C5 60 years, female 47.1
Globus pallidus
Scaled Tags Per Million: 94.7
FF:10175-103C4 60 years, female 102.8
FF:10161-103A8 76 years, female 86.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.0
Pig sample Sample description nTPM
Caudate
nTPM: 19.8
Samples: 4

Max nTPM: 22.3
Min nTPM: 18.7
Sample A Female 19.3
Sample B Female 18.7
Sample C Male 22.3
Sample D Male 18.8
Putamen
nTPM: 23.1
Samples: 4

Max nTPM: 26.4
Min nTPM: 18.1
Sample A Female 26.4
Sample B Female 18.1
Sample C Male 25.2
Sample D Male 22.6
Septum
nTPM: 24.0
Samples: 4

Max nTPM: 25.6
Min nTPM: 21.1
Sample A Female 25.6
Sample B Female 21.1
Sample C Male 24.8
Sample D Male 24.5
Ventral pallidum
nTPM: 23.9
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.4
Sample A Female 21.4
Sample B Female 23.9
Sample C Male 27.3
Sample D Male 23.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 24.9
Samples: 4

Max nTPM: 25.3
Min nTPM: 24.1
Sample A Male 25.3
Sample B Male 24.1
Sample C Female 25.3
Sample D Female 24.7
Septum
nTPM: 20.1
Samples: 4

Max nTPM: 22.4
Min nTPM: 18.2
Sample A Male 19.8
Sample B Male 19.8
Sample C Female 18.2
Sample D Female 22.4
Ventral forebrain
nTPM: 19.3
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.7
Sample A Male 19.9
Sample B Male 21.0
Sample C Female 16.7
Sample D Female 19.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
68798340 Antisense, RP_050215_02_C06, Mouse strain C57BL/6J (56 days, male) 0.6
71064277 Antisense, RP_050725_03_D10, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
68798340 Antisense, RP_050215_02_C06, Mouse strain C57BL/6J (56 days, male) 0.5
71064277 Antisense, RP_050725_03_D10, Mouse strain C57BL/6J (56 days, male) 0.2

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