MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:94.4 nTPM
GTEx:24.6 nTPM
FANTOM5:165.6 Scaled Tags Per Million
Pig:44.8 nTPM
Mouse:25.3 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 94.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.1
1830 Male, age 51, unknown 92.1
2411 Female, age 72, unknown 92.1
1833 Male, age 53, unknown 91.7
1870 Female, age 42, unknown 86.7
2019 Male, age 18, unknown 84.7
2828 Female, age 72, unknown 75.3
2586 Male, age 75, left hemisphere 74.0
2219 Male, age 76, both hemispheres 73.8
2666 Male, age 74, left hemisphere 70.0
1827 Male, age 72, unknown 61.0
Dorsal raphe nucleus
nTPM: 62.7
2750 Male, age 76, both hemispheres 103.4
2016 Female, age 72, unknown 63.9
1828 Male, age 53, unknown 62.9
2047 Male, age 72, unknown 43.0
2298 Female, age 72, unknown 40.5
Inferior colliculus
nTPM: 54.7
1890 Male, age 53, unknown 59.9
2849 Male, age 72, unknown 57.0
1848 Female, age 42, unknown 56.1
2097 Female, age 72, unknown 45.8
Median raphe nucleus
nTPM: 63.0
2220 Male, age 76, midline 63.0
Periaquaductal grey, anterior
nTPM: 51.8
2502 Female, age 75, unknown 59.8
1795 Male, age 51, unknown 49.8
1947 Male, age 18, unknown 45.7
Periaquaductal grey, dorsal
nTPM: 46.9
2464 Female, age 72, unknown 66.0
1831 Male, age 72, unknown 52.7
1840 Male, age 53, unknown 35.3
2850 Male, age 76, both hemispheres 33.7
Periaquaductal grey, lateral
nTPM: 51.3
2053 Male, age 18, unknown 60.3
2272 Male, age 74, both hemispheres 57.6
2140 Male, age 76, both hemispheres 36.1
Pretectal area
nTPM: 59.7
1815 Male, age 53, unknown 74.4
2316 Male, age 76, right hemisphere 71.0
2667 Female, age 75, unknown 69.8
2407 Male, age 75, both hemispheres 64.4
1817 Female, age 42, unknown 63.2
2007 Male, age 72, unknown 59.1
2825 Male, age 18, unknown 55.2
2273 Male, age 74, both hemispheres 53.9
1944 Female, age 72, unknown 49.1
2224 Female, age 72, unknown 48.7
1816 Male, age 51, unknown 48.0
Red nucleus
nTPM: 94.4
2823 Male, age 76, right hemisphere 113.6
1904 Male, age 53, unknown 106.4
1865 Male, age 51, unknown 104.2
2769 Male, age 72, unknown 101.7
2227 Male, age 72, unknown 100.5
2588 Male, age 74, left hemisphere 97.8
2503 Female, age 72, unknown 95.1
1821 Female, age 72, unknown 90.9
2785 Male, age 18, unknown 88.9
1954 Female, age 42, unknown 87.9
2584 Male, age 75, left hemisphere 80.6
2725 Female, age 75, unknown 65.7
Substantia nigra
nTPM: 59.6
2583 Male, age 75, right hemisphere 72.5
2409 Female, age 72, unknown 66.7
1851 Male, age 51, unknown 65.5
2699 Male, age 18, unknown 64.3
2590 Female, age 75, unknown 63.1
1889 Female, age 72, unknown 60.8
2241 Male, age 72, unknown 54.3
2665 Male, age 74, both hemispheres 54.2
1941 Male, age 53, unknown 48.6
1916 Female, age 42, unknown 46.6
Superior colliculus
nTPM: 68.8
1913 Female, age 42, unknown 99.7
1995 Male, age 72, unknown 92.0
1839 Male, age 51, unknown 69.3
2587 Male, age 74, left hemisphere 67.9
1895 Male, age 76, right hemisphere 66.8
2668 Female, age 75, unknown 65.5
2261 Male, age 18, unknown 61.2
2664 Male, age 75, both hemispheres 56.7
2087 Female, age 72, unknown 54.8
1796 Male, age 53, unknown 53.9
Ventral tegmental area
nTPM: 69.0
2223 Female, age 72, unknown 89.8
2410 Female, age 72, unknown 78.3
2021 Male, age 53, unknown 68.2
2218 Male, age 76, both hemispheres 64.5
1942 Male, age 51, unknown 58.7
1915 Female, age 42, unknown 54.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.6
Samples: 139

Max nTPM: 74.5
Min nTPM: 10.1
Std nTPM: 9.0
Median nTPM: 22.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 74.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 55.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 50.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 41.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 39.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 38.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 38.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 37.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.6
FF:10158-103A5 76 years, female 165.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 44.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.8
Samples: 4

Max nTPM: 69.7
Min nTPM: 34.3
Sample A Female 39.2
Sample B Female 36.0
Sample C Male 34.3
Sample D Male 69.7
Midbrain
nTPM: 42.8
Samples: 4

Max nTPM: 76.4
Min nTPM: 26.3
Sample A Female 76.4
Sample B Female 38.7
Sample C Male 26.3
Sample D Male 29.6
Periaqueductal gray
nTPM: 32.4
Samples: 3

Max nTPM: 35.7
Min nTPM: 26.4
Sample B Female 35.0
Sample C Male 26.4
Sample D Male 35.7
Superior colliculi
nTPM: 36.5
Samples: 4

Max nTPM: 45.8
Min nTPM: 29.8
Sample A Female 35.9
Sample B Female 29.8
Sample C Male 34.6
Sample D Male 45.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 28.0
Min nTPM: 23.4
Sample A Male 24.7
Sample B Male 25.0
Sample C Female 28.0
Sample D Female 23.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
70717357 Antisense, RP_050414_02_H09, Mouse strain C57BL/6J (56 days, male) 2.2

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