MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.4 nTPM
HPA Brain:87.7 nTPM
GTEx:29.4 nTPM
FANTOM5:46.4 Scaled Tags Per Million
Pig:17.1 nTPM
Mouse:14.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.8
1830 Male, age 51, unknown 94.7
2411 Female, age 72, unknown 91.4
2219 Male, age 76, both hemispheres 89.9
1833 Male, age 53, unknown 88.5
1827 Male, age 72, unknown 77.1
2828 Female, age 72, unknown 75.8
1870 Female, age 42, unknown 75.1
2019 Male, age 18, unknown 74.2
2666 Male, age 74, left hemisphere 73.5
2586 Male, age 75, left hemisphere 67.5
Dorsal raphe nucleus
nTPM: 74.7
2750 Male, age 76, both hemispheres 94.5
2047 Male, age 72, unknown 77.0
1828 Male, age 53, unknown 72.3
2016 Female, age 72, unknown 68.5
2298 Female, age 72, unknown 61.4
Inferior colliculus
nTPM: 75.8
2849 Male, age 72, unknown 80.2
1848 Female, age 42, unknown 79.1
1890 Male, age 53, unknown 77.4
2097 Female, age 72, unknown 66.5
Median raphe nucleus
nTPM: 80.4
2220 Male, age 76, midline 80.4
Periaquaductal grey, anterior
nTPM: 71.2
1947 Male, age 18, unknown 79.4
2502 Female, age 75, unknown 68.1
1795 Male, age 51, unknown 66.2
Periaquaductal grey, dorsal
nTPM: 72.2
2464 Female, age 72, unknown 79.7
2850 Male, age 76, both hemispheres 73.0
1831 Male, age 72, unknown 72.1
1840 Male, age 53, unknown 64.0
Periaquaductal grey, lateral
nTPM: 76.7
2140 Male, age 76, both hemispheres 78.4
2272 Male, age 74, both hemispheres 76.3
2053 Male, age 18, unknown 75.5
Pretectal area
nTPM: 75.6
2407 Male, age 75, both hemispheres 90.1
2667 Female, age 75, unknown 89.3
2316 Male, age 76, right hemisphere 82.3
1815 Male, age 53, unknown 78.5
2825 Male, age 18, unknown 78.1
2273 Male, age 74, both hemispheres 74.8
2224 Female, age 72, unknown 71.0
1944 Female, age 72, unknown 69.5
2007 Male, age 72, unknown 68.0
1817 Female, age 42, unknown 67.9
1816 Male, age 51, unknown 62.1
Red nucleus
nTPM: 87.7
2823 Male, age 76, right hemisphere 106.2
2588 Male, age 74, left hemisphere 98.5
1865 Male, age 51, unknown 94.8
1904 Male, age 53, unknown 92.0
2227 Male, age 72, unknown 88.7
2769 Male, age 72, unknown 87.1
1954 Female, age 42, unknown 83.9
2503 Female, age 72, unknown 83.0
2785 Male, age 18, unknown 81.4
2584 Male, age 75, left hemisphere 79.6
2725 Female, age 75, unknown 79.2
1821 Female, age 72, unknown 77.8
Substantia nigra
nTPM: 72.0
2699 Male, age 18, unknown 80.8
2583 Male, age 75, right hemisphere 76.6
2409 Female, age 72, unknown 75.9
2590 Female, age 75, unknown 75.7
1941 Male, age 53, unknown 71.5
2241 Male, age 72, unknown 70.8
2665 Male, age 74, both hemispheres 69.5
1851 Male, age 51, unknown 69.3
1889 Female, age 72, unknown 67.3
1916 Female, age 42, unknown 63.0
Superior colliculus
nTPM: 76.3
1913 Female, age 42, unknown 89.4
1895 Male, age 76, right hemisphere 87.0
1995 Male, age 72, unknown 79.1
2587 Male, age 74, left hemisphere 78.6
1839 Male, age 51, unknown 77.2
2087 Female, age 72, unknown 73.1
1796 Male, age 53, unknown 71.7
2668 Female, age 75, unknown 69.7
2261 Male, age 18, unknown 68.5
2664 Male, age 75, both hemispheres 68.4
Ventral tegmental area
nTPM: 76.6
2223 Female, age 72, unknown 84.0
1942 Male, age 51, unknown 78.8
2218 Male, age 76, both hemispheres 78.5
2410 Female, age 72, unknown 77.4
2021 Male, age 53, unknown 75.3
1915 Female, age 42, unknown 65.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.4
Samples: 139

Max nTPM: 60.2
Min nTPM: 10.0
Std nTPM: 9.6
Median nTPM: 29.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 60.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 54.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 50.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 50.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 48.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 47.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 46.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 46.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 46.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 46.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 45.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.4
FF:10158-103A5 76 years, female 46.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.4
Samples: 4

Max nTPM: 17.8
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 16.3
Sample C Male 16.0
Sample D Male 17.8
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.7
Min nTPM: 14.6
Sample A Female 18.7
Sample B Female 14.6
Sample C Male 17.6
Sample D Male 17.5
Periaqueductal gray
nTPM: 16.5
Samples: 3

Max nTPM: 17.2
Min nTPM: 15.3
Sample B Female 15.3
Sample C Male 17.0
Sample D Male 17.2
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 15.4
Sample A Female 16.8
Sample B Female 16.7
Sample C Male 15.4
Sample D Male 17.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.5
Samples: 4

Max nTPM: 15.3
Min nTPM: 13.5
Sample A Male 14.0
Sample B Male 15.0
Sample C Female 15.3
Sample D Female 13.5

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