MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.1 nTPM
HPA Brain:50.1 nTPM
GTEx:54.1 nTPM
FANTOM5:77.8 Scaled Tags Per Million
Pig:88.4 nTPM
Mouse:89.7 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.2
2411 Female, age 72, unknown 51.6
1870 Female, age 42, unknown 48.7
1827 Male, age 72, unknown 47.6
1833 Male, age 53, unknown 45.6
2019 Male, age 18, unknown 43.4
2828 Female, age 72, unknown 41.6
1830 Male, age 51, unknown 39.6
2219 Male, age 76, both hemispheres 38.3
2666 Male, age 74, left hemisphere 37.3
2586 Male, age 75, left hemisphere 28.6
Dorsal raphe nucleus
nTPM: 50.0
2298 Female, age 72, unknown 59.4
2047 Male, age 72, unknown 51.1
2750 Male, age 76, both hemispheres 49.8
1828 Male, age 53, unknown 45.6
2016 Female, age 72, unknown 44.1
Inferior colliculus
nTPM: 39.8
2097 Female, age 72, unknown 43.1
1848 Female, age 42, unknown 41.1
1890 Male, age 53, unknown 38.2
2849 Male, age 72, unknown 36.6
Median raphe nucleus
nTPM: 50.1
2220 Male, age 76, midline 50.1
Periaquaductal grey, anterior
nTPM: 45.4
1947 Male, age 18, unknown 50.3
1795 Male, age 51, unknown 42.9
2502 Female, age 75, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 42.1
2850 Male, age 76, both hemispheres 47.9
1840 Male, age 53, unknown 41.1
2464 Female, age 72, unknown 40.9
1831 Male, age 72, unknown 38.4
Periaquaductal grey, lateral
nTPM: 44.4
2272 Male, age 74, both hemispheres 48.1
2140 Male, age 76, both hemispheres 43.2
2053 Male, age 18, unknown 41.9
Pretectal area
nTPM: 45.4
2224 Female, age 72, unknown 50.1
2273 Male, age 74, both hemispheres 48.3
1816 Male, age 51, unknown 47.3
2667 Female, age 75, unknown 47.3
1815 Male, age 53, unknown 46.8
1817 Female, age 42, unknown 46.6
2007 Male, age 72, unknown 45.8
1944 Female, age 72, unknown 44.4
2825 Male, age 18, unknown 42.4
2316 Male, age 76, right hemisphere 42.1
2407 Male, age 75, both hemispheres 37.9
Red nucleus
nTPM: 42.7
1821 Female, age 72, unknown 53.4
2725 Female, age 75, unknown 47.9
2823 Male, age 76, right hemisphere 45.4
1904 Male, age 53, unknown 45.1
1865 Male, age 51, unknown 45.0
2503 Female, age 72, unknown 44.0
1954 Female, age 42, unknown 43.9
2785 Male, age 18, unknown 40.2
2769 Male, age 72, unknown 39.7
2227 Male, age 72, unknown 38.6
2588 Male, age 74, left hemisphere 36.3
2584 Male, age 75, left hemisphere 32.5
Substantia nigra
nTPM: 48.5
2241 Male, age 72, unknown 58.4
1916 Female, age 42, unknown 56.2
1851 Male, age 51, unknown 54.6
2409 Female, age 72, unknown 51.9
2699 Male, age 18, unknown 48.4
1941 Male, age 53, unknown 47.3
1889 Female, age 72, unknown 47.1
2665 Male, age 74, both hemispheres 43.5
2590 Female, age 75, unknown 42.5
2583 Male, age 75, right hemisphere 35.4
Superior colliculus
nTPM: 41.8
2587 Male, age 74, left hemisphere 48.4
1895 Male, age 76, right hemisphere 45.0
1913 Female, age 42, unknown 44.3
1796 Male, age 53, unknown 43.7
2261 Male, age 18, unknown 42.5
2668 Female, age 75, unknown 41.9
2087 Female, age 72, unknown 40.3
1839 Male, age 51, unknown 39.8
1995 Male, age 72, unknown 39.8
2664 Male, age 75, both hemispheres 32.2
Ventral tegmental area
nTPM: 47.4
2410 Female, age 72, unknown 51.4
1915 Female, age 42, unknown 50.9
2218 Male, age 76, both hemispheres 49.9
2223 Female, age 72, unknown 44.5
2021 Male, age 53, unknown 43.9
1942 Male, age 51, unknown 43.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.1
Samples: 139

Max nTPM: 83.9
Min nTPM: 33.3
Std nTPM: 8.7
Median nTPM: 52.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 80.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 75.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 71.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 71.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 69.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 69.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 68.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 67.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 67.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 77.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 77.8
FF:10158-103A5 76 years, female 77.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 88.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 87.7
Samples: 4

Max nTPM: 114.1
Min nTPM: 74.8
Sample A Female 114.1
Sample B Female 75.3
Sample C Male 86.7
Sample D Male 74.8
Midbrain
nTPM: 88.5
Samples: 4

Max nTPM: 124.4
Min nTPM: 69.8
Sample A Female 124.4
Sample B Female 83.0
Sample C Male 76.6
Sample D Male 69.8
Periaqueductal gray
nTPM: 76.5
Samples: 3

Max nTPM: 82.7
Min nTPM: 70.8
Sample B Female 76.0
Sample C Male 82.7
Sample D Male 70.8
Superior colliculi
nTPM: 86.5
Samples: 4

Max nTPM: 103.9
Min nTPM: 79.0
Sample A Female 103.9
Sample B Female 79.0
Sample C Male 82.1
Sample D Male 80.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 89.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 89.8
Samples: 4

Max nTPM: 90.5
Min nTPM: 87.9
Sample A Male 90.3
Sample B Male 87.9
Sample C Female 90.3
Sample D Female 90.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
67815541 Antisense, RP_040920_01_G11, Mouse strain C57BL/6J (56 days, male) 4.2

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