MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:106.3 nTPM
GTEx:9.7 nTPM
FANTOM5:115.7 Scaled Tags Per Million
Pig:68.3 nTPM
Mouse:27.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 106.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 94.7
2411 Female, age 72, unknown 112.2
2019 Male, age 18, unknown 107.4
1870 Female, age 42, unknown 106.2
1830 Male, age 51, unknown 103.4
1833 Male, age 53, unknown 96.4
1827 Male, age 72, unknown 92.3
2219 Male, age 76, both hemispheres 90.9
2666 Male, age 74, left hemisphere 87.1
2828 Female, age 72, unknown 87.0
2586 Male, age 75, left hemisphere 63.7
Dorsal raphe nucleus
nTPM: 90.0
2750 Male, age 76, both hemispheres 112.5
2047 Male, age 72, unknown 88.3
1828 Male, age 53, unknown 87.7
2016 Female, age 72, unknown 82.3
2298 Female, age 72, unknown 79.1
Inferior colliculus
nTPM: 85.2
1890 Male, age 53, unknown 94.0
1848 Female, age 42, unknown 86.7
2097 Female, age 72, unknown 83.4
2849 Male, age 72, unknown 76.7
Median raphe nucleus
nTPM: 93.5
2220 Male, age 76, midline 93.5
Periaquaductal grey, anterior
nTPM: 78.4
1947 Male, age 18, unknown 83.8
2502 Female, age 75, unknown 77.3
1795 Male, age 51, unknown 74.1
Periaquaductal grey, dorsal
nTPM: 79.4
1831 Male, age 72, unknown 85.1
2464 Female, age 72, unknown 83.5
1840 Male, age 53, unknown 78.8
2850 Male, age 76, both hemispheres 70.3
Periaquaductal grey, lateral
nTPM: 82.8
2272 Male, age 74, both hemispheres 87.1
2140 Male, age 76, both hemispheres 84.4
2053 Male, age 18, unknown 77.0
Pretectal area
nTPM: 88.4
2007 Male, age 72, unknown 99.7
2316 Male, age 76, right hemisphere 94.4
1817 Female, age 42, unknown 93.2
1816 Male, age 51, unknown 91.3
1815 Male, age 53, unknown 89.5
2273 Male, age 74, both hemispheres 88.0
2407 Male, age 75, both hemispheres 86.2
2825 Male, age 18, unknown 85.3
1944 Female, age 72, unknown 82.7
2224 Female, age 72, unknown 82.4
2667 Female, age 75, unknown 79.9
Red nucleus
nTPM: 106.3
1821 Female, age 72, unknown 119.9
2503 Female, age 72, unknown 118.1
1865 Male, age 51, unknown 109.3
2769 Male, age 72, unknown 109.2
2227 Male, age 72, unknown 108.0
1904 Male, age 53, unknown 107.4
2823 Male, age 76, right hemisphere 107.2
2785 Male, age 18, unknown 107.0
1954 Female, age 42, unknown 100.7
2588 Male, age 74, left hemisphere 100.2
2725 Female, age 75, unknown 96.4
2584 Male, age 75, left hemisphere 91.9
Substantia nigra
nTPM: 93.2
1916 Female, age 42, unknown 111.3
2590 Female, age 75, unknown 109.7
2583 Male, age 75, right hemisphere 104.9
1851 Male, age 51, unknown 96.7
1941 Male, age 53, unknown 93.8
1889 Female, age 72, unknown 93.2
2409 Female, age 72, unknown 86.0
2241 Male, age 72, unknown 79.8
2699 Male, age 18, unknown 79.6
2665 Male, age 74, both hemispheres 76.8
Superior colliculus
nTPM: 89.3
1913 Female, age 42, unknown 101.1
2587 Male, age 74, left hemisphere 100.7
1895 Male, age 76, right hemisphere 94.3
2261 Male, age 18, unknown 92.4
2668 Female, age 75, unknown 92.0
1995 Male, age 72, unknown 91.6
2087 Female, age 72, unknown 86.8
1796 Male, age 53, unknown 84.8
1839 Male, age 51, unknown 84.3
2664 Male, age 75, both hemispheres 65.5
Ventral tegmental area
nTPM: 98.7
2223 Female, age 72, unknown 117.5
2410 Female, age 72, unknown 109.1
2218 Male, age 76, both hemispheres 95.3
1915 Female, age 42, unknown 93.4
1942 Male, age 51, unknown 88.5
2021 Male, age 53, unknown 88.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 139

Max nTPM: 31.2
Min nTPM: 0.2
Std nTPM: 5.2
Median nTPM: 8.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 24.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 23.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 22.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 22.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 21.7
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 20.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 20.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 18.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 18.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.7
FF:10158-103A5 76 years, female 115.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.7
Samples: 4

Max nTPM: 69.0
Min nTPM: 41.9
Sample A Female 59.5
Sample B Female 41.9
Sample C Male 60.2
Sample D Male 69.0
Midbrain
nTPM: 68.3
Samples: 4

Max nTPM: 95.0
Min nTPM: 55.1
Sample A Female 95.0
Sample B Female 55.1
Sample C Male 64.2
Sample D Male 58.8
Periaqueductal gray
nTPM: 51.6
Samples: 3

Max nTPM: 52.9
Min nTPM: 50.7
Sample B Female 50.7
Sample C Male 52.9
Sample D Male 51.2
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 69.3
Min nTPM: 37.8
Sample A Female 58.2
Sample B Female 37.8
Sample C Male 64.9
Sample D Male 69.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 27.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.0
Sample A Male 24.0
Sample B Male 27.9
Sample C Female 31.5
Sample D Female 27.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
77620273 Antisense, RP_070129_05_E08, Mouse strain C57BL/6J (56 days, male) 0.2

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