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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
50.5
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 50.5
Samples: 152
Max nTPM: 87.2
Min nTPM: 17.5
Std nTPM: 10.0
Median nTPM: 50.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
87.2
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
77.4
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
74.0
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
73.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
72.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
70.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
67.9
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
67.5
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
67.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
67.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
66.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
65.7
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
65.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
64.2
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
63.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
63.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
62.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
62.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
62.1
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
61.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
61.5
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
60.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
60.7
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
60.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
59.7
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
59.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
59.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
59.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
58.7
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
58.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
58.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
58.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
57.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
57.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
57.5
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
56.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
56.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
56.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
56.1
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
56.0
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
55.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
55.3
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
55.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
55.1
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
55.0
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
55.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
55.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
54.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
54.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
54.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
53.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
53.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
53.6
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
53.0
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
52.6
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
52.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
52.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
52.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
52.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
52.3
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
52.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
52.1
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
51.9
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
51.9
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
51.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
51.3
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
51.0
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
51.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
51.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
50.9
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
50.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
50.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
50.6
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
50.4
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
50.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
50.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
50.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
49.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
49.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
49.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
49.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
49.3
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
49.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
48.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
48.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
48.8
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
48.7
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
48.6
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
48.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
48.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
47.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
47.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
46.8
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
46.4
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
46.0
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
45.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
45.7
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
45.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
45.4
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
45.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
45.2
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
44.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
44.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
44.8
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
44.7
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
44.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
44.4
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
44.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
44.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
44.0
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
44.0
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
43.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
43.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
43.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
43.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
43.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
43.4
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
43.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
43.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
43.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
42.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
42.9
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
42.8
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
42.8
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
42.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
42.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
41.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
41.1
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
41.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
40.9
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
40.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
40.3
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
40.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
40.2
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
39.6
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
38.7
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
38.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
38.0
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
37.6
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
37.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
37.1
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
36.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
36.8
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
36.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
36.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
36.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
36.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
35.1
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
32.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
31.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
29.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
17.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
34.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 34.6
Samples: 4
Max nTPM: 36.5
Min nTPM: 33.0
Sample A
Male
36.5
Sample B
Male
34.8
Sample C
Female
33.0
Sample D
Female
34.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
