MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.5 nTPM
HPA Brain:74.7 nTPM
GTEx:56.5 nTPM
FANTOM5:165.3 Scaled Tags Per Million
Pig:42.2 nTPM
Mouse:21.8 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
2019 Male, age 18, unknown 88.4
1870 Female, age 42, unknown 71.8
2411 Female, age 72, unknown 70.8
1830 Male, age 51, unknown 62.7
2828 Female, age 72, unknown 60.9
1833 Male, age 53, unknown 60.8
2219 Male, age 76, both hemispheres 57.8
1827 Male, age 72, unknown 53.6
2586 Male, age 75, left hemisphere 48.7
2666 Male, age 74, left hemisphere 47.9
Dorsal raphe nucleus
nTPM: 63.6
2750 Male, age 76, both hemispheres 82.8
1828 Male, age 53, unknown 65.0
2298 Female, age 72, unknown 60.6
2047 Male, age 72, unknown 55.5
2016 Female, age 72, unknown 54.1
Inferior colliculus
nTPM: 53.9
2097 Female, age 72, unknown 56.9
1890 Male, age 53, unknown 56.1
1848 Female, age 42, unknown 53.4
2849 Male, age 72, unknown 49.1
Median raphe nucleus
nTPM: 60.7
2220 Male, age 76, midline 60.7
Periaquaductal grey, anterior
nTPM: 55.6
2502 Female, age 75, unknown 59.6
1947 Male, age 18, unknown 57.2
1795 Male, age 51, unknown 50.1
Periaquaductal grey, dorsal
nTPM: 46.5
2464 Female, age 72, unknown 54.5
1831 Male, age 72, unknown 46.2
2850 Male, age 76, both hemispheres 44.7
1840 Male, age 53, unknown 40.7
Periaquaductal grey, lateral
nTPM: 43.2
2272 Male, age 74, both hemispheres 48.6
2053 Male, age 18, unknown 42.6
2140 Male, age 76, both hemispheres 38.5
Pretectal area
nTPM: 60.2
1817 Female, age 42, unknown 74.4
2007 Male, age 72, unknown 71.9
2667 Female, age 75, unknown 68.7
1815 Male, age 53, unknown 67.7
1944 Female, age 72, unknown 65.4
1816 Male, age 51, unknown 63.8
2273 Male, age 74, both hemispheres 56.3
2316 Male, age 76, right hemisphere 50.6
2407 Male, age 75, both hemispheres 49.8
2224 Female, age 72, unknown 49.6
2825 Male, age 18, unknown 43.9
Red nucleus
nTPM: 74.7
1821 Female, age 72, unknown 85.2
1865 Male, age 51, unknown 81.9
1904 Male, age 53, unknown 80.9
2785 Male, age 18, unknown 80.8
2503 Female, age 72, unknown 79.5
2823 Male, age 76, right hemisphere 77.5
1954 Female, age 42, unknown 76.8
2227 Male, age 72, unknown 74.6
2769 Male, age 72, unknown 74.0
2725 Female, age 75, unknown 68.4
2588 Male, age 74, left hemisphere 63.2
2584 Male, age 75, left hemisphere 53.3
Substantia nigra
nTPM: 60.6
1889 Female, age 72, unknown 71.6
1916 Female, age 42, unknown 71.1
1851 Male, age 51, unknown 67.5
1941 Male, age 53, unknown 61.2
2409 Female, age 72, unknown 60.5
2241 Male, age 72, unknown 58.9
2583 Male, age 75, right hemisphere 56.9
2590 Female, age 75, unknown 54.2
2665 Male, age 74, both hemispheres 52.0
2699 Male, age 18, unknown 51.8
Superior colliculus
nTPM: 57.0
1913 Female, age 42, unknown 72.1
1995 Male, age 72, unknown 67.2
2587 Male, age 74, left hemisphere 62.5
2087 Female, age 72, unknown 57.6
1796 Male, age 53, unknown 55.3
2261 Male, age 18, unknown 55.2
2668 Female, age 75, unknown 54.5
1895 Male, age 76, right hemisphere 54.2
1839 Male, age 51, unknown 51.7
2664 Male, age 75, both hemispheres 40.1
Ventral tegmental area
nTPM: 63.6
2223 Female, age 72, unknown 78.8
2410 Female, age 72, unknown 69.0
2218 Male, age 76, both hemispheres 63.2
1915 Female, age 42, unknown 60.7
1942 Male, age 51, unknown 55.9
2021 Male, age 53, unknown 54.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 56.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 56.5
Samples: 139

Max nTPM: 103.8
Min nTPM: 38.5
Std nTPM: 12.6
Median nTPM: 53.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 103.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 102.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 99.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 93.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 93.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 90.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 88.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 76.4
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 75.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 74.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 73.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.3
FF:10158-103A5 76 years, female 165.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 39.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 31.7
Sample A Female 39.4
Sample B Female 31.7
Sample C Male 40.4
Sample D Male 44.4
Midbrain
nTPM: 42.3
Samples: 4

Max nTPM: 54.3
Min nTPM: 31.6
Sample A Female 54.3
Sample B Female 35.9
Sample C Male 47.2
Sample D Male 31.6
Periaqueductal gray
nTPM: 34.2
Samples: 3

Max nTPM: 36.4
Min nTPM: 30.1
Sample B Female 36.4
Sample C Male 36.1
Sample D Male 30.1
Superior colliculi
nTPM: 40.4
Samples: 4

Max nTPM: 49.8
Min nTPM: 30.7
Sample A Female 40.3
Sample B Female 30.7
Sample C Male 49.8
Sample D Male 40.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 21.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 22.6
Min nTPM: 21.1
Sample A Male 22.4
Sample B Male 21.1
Sample C Female 22.6
Sample D Female 21.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
70429154 Antisense, RP_050614_01_B02, Mouse strain C57BL/6J (56 days, male) 1.2

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