MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.3 nTPM
HPA Brain:36.7 nTPM
GTEx:5.3 nTPM
FANTOM5:4.8 Scaled Tags Per Million
Pig:18.1 nTPM
Mouse:15.9 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
2219 Male, age 76, both hemispheres 72.1
2019 Male, age 18, unknown 38.3
2586 Male, age 75, left hemisphere 38.2
2666 Male, age 74, left hemisphere 33.8
2828 Female, age 72, unknown 30.6
1827 Male, age 72, unknown 30.1
2411 Female, age 72, unknown 28.2
1830 Male, age 51, unknown 21.5
1870 Female, age 42, unknown 20.2
1833 Male, age 53, unknown 18.5
Dorsal raphe nucleus
nTPM: 22.4
2298 Female, age 72, unknown 28.4
2047 Male, age 72, unknown 25.4
1828 Male, age 53, unknown 21.5
2750 Male, age 76, both hemispheres 19.6
2016 Female, age 72, unknown 17.3
Inferior colliculus
nTPM: 26.1
2097 Female, age 72, unknown 28.3
1848 Female, age 42, unknown 26.5
2849 Male, age 72, unknown 26.3
1890 Male, age 53, unknown 23.3
Median raphe nucleus
nTPM: 27.9
2220 Male, age 76, midline 27.9
Periaquaductal grey, anterior
nTPM: 28.6
1795 Male, age 51, unknown 35.9
1947 Male, age 18, unknown 26.2
2502 Female, age 75, unknown 23.6
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 31.0
1831 Male, age 72, unknown 25.2
1840 Male, age 53, unknown 22.8
2850 Male, age 76, both hemispheres 17.2
Periaquaductal grey, lateral
nTPM: 21.7
2053 Male, age 18, unknown 24.8
2140 Male, age 76, both hemispheres 22.1
2272 Male, age 74, both hemispheres 18.1
Pretectal area
nTPM: 36.7
2007 Male, age 72, unknown 58.6
1816 Male, age 51, unknown 56.6
1817 Female, age 42, unknown 53.2
1944 Female, age 72, unknown 50.1
1815 Male, age 53, unknown 39.1
2224 Female, age 72, unknown 28.6
2316 Male, age 76, right hemisphere 27.8
2407 Male, age 75, both hemispheres 26.8
2667 Female, age 75, unknown 24.8
2825 Male, age 18, unknown 22.4
2273 Male, age 74, both hemispheres 15.1
Red nucleus
nTPM: 20.1
2785 Male, age 18, unknown 38.2
2584 Male, age 75, left hemisphere 28.7
2588 Male, age 74, left hemisphere 25.5
2823 Male, age 76, right hemisphere 20.6
1954 Female, age 42, unknown 20.3
2503 Female, age 72, unknown 17.3
2227 Male, age 72, unknown 17.1
2769 Male, age 72, unknown 17.0
1821 Female, age 72, unknown 15.5
2725 Female, age 75, unknown 14.0
1865 Male, age 51, unknown 13.2
1904 Male, age 53, unknown 13.2
Substantia nigra
nTPM: 17.0
1889 Female, age 72, unknown 35.4
1941 Male, age 53, unknown 31.1
2665 Male, age 74, both hemispheres 20.3
1851 Male, age 51, unknown 15.0
1916 Female, age 42, unknown 14.2
2590 Female, age 75, unknown 14.2
2583 Male, age 75, right hemisphere 12.3
2241 Male, age 72, unknown 11.9
2699 Male, age 18, unknown 8.4
2409 Female, age 72, unknown 6.7
Superior colliculus
nTPM: 32.9
2668 Female, age 75, unknown 69.9
2087 Female, age 72, unknown 42.0
2664 Male, age 75, both hemispheres 36.8
1796 Male, age 53, unknown 33.8
2261 Male, age 18, unknown 30.0
1895 Male, age 76, right hemisphere 28.0
1839 Male, age 51, unknown 24.9
1913 Female, age 42, unknown 24.6
1995 Male, age 72, unknown 22.3
2587 Male, age 74, left hemisphere 16.8
Ventral tegmental area
nTPM: 20.3
1942 Male, age 51, unknown 23.6
2218 Male, age 76, both hemispheres 21.8
2021 Male, age 53, unknown 21.5
2223 Female, age 72, unknown 21.3
2410 Female, age 72, unknown 17.5
1915 Female, age 42, unknown 15.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.3
Samples: 139

Max nTPM: 35.5
Min nTPM: 0.5
Std nTPM: 4.9
Median nTPM: 4.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 35.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 29.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 22.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 19.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 13.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 13.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 11.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 10.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 9.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.8
FF:10158-103A5 76 years, female 4.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 15.8
Min nTPM: 9.7
Sample A Female 14.4
Sample B Female 10.9
Sample C Male 15.8
Sample D Male 9.7
Midbrain
nTPM: 17.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 10.6
Sample A Female 10.6
Sample B Female 11.5
Sample C Male 24.3
Sample D Male 21.4
Periaqueductal gray
nTPM: 10.7
Samples: 3

Max nTPM: 11.2
Min nTPM: 9.7
Sample B Female 11.1
Sample C Male 11.2
Sample D Male 9.7
Superior colliculi
nTPM: 18.1
Samples: 4

Max nTPM: 23.0
Min nTPM: 13.2
Sample A Female 17.7
Sample B Female 13.2
Sample C Male 23.0
Sample D Male 18.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.9
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.7
Sample A Male 16.9
Sample B Male 14.7
Sample C Female 16.0
Sample D Female 16.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
69817187 Antisense, RP_050510_02_G09, Mouse strain C57BL/6J (56 days, male) 2.2

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