MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.8 nTPM
HPA Brain:135.8 nTPM
GTEx:99.8 nTPM
FANTOM5:206.5 Scaled Tags Per Million
Pig:189.9 nTPM
Mouse:165.1 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 135.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 120.5
1870 Female, age 42, unknown 132.9
2666 Male, age 74, left hemisphere 127.9
2828 Female, age 72, unknown 127.6
1833 Male, age 53, unknown 126.8
1830 Male, age 51, unknown 123.8
2586 Male, age 75, left hemisphere 121.6
2411 Female, age 72, unknown 120.0
2019 Male, age 18, unknown 112.3
1827 Male, age 72, unknown 109.7
2219 Male, age 76, both hemispheres 101.9
Dorsal raphe nucleus
nTPM: 106.7
2750 Male, age 76, both hemispheres 140.2
1828 Male, age 53, unknown 108.2
2047 Male, age 72, unknown 100.8
2298 Female, age 72, unknown 93.1
2016 Female, age 72, unknown 91.3
Inferior colliculus
nTPM: 84.7
1848 Female, age 42, unknown 88.8
2849 Male, age 72, unknown 88.5
1890 Male, age 53, unknown 85.0
2097 Female, age 72, unknown 76.3
Median raphe nucleus
nTPM: 123.8
2220 Male, age 76, midline 123.8
Periaquaductal grey, anterior
nTPM: 105.9
1947 Male, age 18, unknown 112.6
1795 Male, age 51, unknown 102.6
2502 Female, age 75, unknown 102.5
Periaquaductal grey, dorsal
nTPM: 81.4
2850 Male, age 76, both hemispheres 88.6
1831 Male, age 72, unknown 84.3
2464 Female, age 72, unknown 82.3
1840 Male, age 53, unknown 70.5
Periaquaductal grey, lateral
nTPM: 88.1
2272 Male, age 74, both hemispheres 93.8
2053 Male, age 18, unknown 88.6
2140 Male, age 76, both hemispheres 82.0
Pretectal area
nTPM: 99.0
2407 Male, age 75, both hemispheres 114.1
1815 Male, age 53, unknown 112.7
2667 Female, age 75, unknown 110.4
2825 Male, age 18, unknown 103.9
1817 Female, age 42, unknown 101.1
2007 Male, age 72, unknown 98.1
2316 Male, age 76, right hemisphere 95.8
1816 Male, age 51, unknown 91.6
1944 Female, age 72, unknown 90.5
2273 Male, age 74, both hemispheres 90.0
2224 Female, age 72, unknown 80.7
Red nucleus
nTPM: 135.8
1865 Male, age 51, unknown 152.5
1821 Female, age 72, unknown 149.6
1904 Male, age 53, unknown 149.6
2823 Male, age 76, right hemisphere 140.2
2769 Male, age 72, unknown 138.9
2227 Male, age 72, unknown 136.8
2584 Male, age 75, left hemisphere 133.6
2588 Male, age 74, left hemisphere 133.4
1954 Female, age 42, unknown 132.5
2503 Female, age 72, unknown 124.2
2785 Male, age 18, unknown 121.6
2725 Female, age 75, unknown 117.2
Substantia nigra
nTPM: 122.9
1916 Female, age 42, unknown 157.4
1851 Male, age 51, unknown 134.4
2699 Male, age 18, unknown 129.6
2583 Male, age 75, right hemisphere 128.5
1941 Male, age 53, unknown 125.8
2241 Male, age 72, unknown 120.7
2590 Female, age 75, unknown 110.3
2409 Female, age 72, unknown 108.3
2665 Male, age 74, both hemispheres 108.1
1889 Female, age 72, unknown 106.3
Superior colliculus
nTPM: 106.5
2668 Female, age 75, unknown 124.7
1913 Female, age 42, unknown 120.1
2587 Male, age 74, left hemisphere 112.4
1995 Male, age 72, unknown 109.3
2261 Male, age 18, unknown 105.2
1796 Male, age 53, unknown 102.6
1895 Male, age 76, right hemisphere 102.4
2664 Male, age 75, both hemispheres 100.9
1839 Male, age 51, unknown 99.9
2087 Female, age 72, unknown 87.3
Ventral tegmental area
nTPM: 119.5
2223 Female, age 72, unknown 139.7
2218 Male, age 76, both hemispheres 126.0
1915 Female, age 42, unknown 124.0
2410 Female, age 72, unknown 118.9
1942 Male, age 51, unknown 109.3
2021 Male, age 53, unknown 99.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 99.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.8
Samples: 139

Max nTPM: 207.2
Min nTPM: 52.1
Std nTPM: 26.0
Median nTPM: 97.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 207.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 196.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 174.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 164.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 156.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 154.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 142.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 142.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 139.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 135.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 134.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 206.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 206.5
FF:10158-103A5 76 years, female 206.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 189.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 186.0
Samples: 4

Max nTPM: 227.4
Min nTPM: 124.1
Sample A Female 227.4
Sample B Female 124.1
Sample C Male 206.7
Sample D Male 185.8
Midbrain
nTPM: 189.9
Samples: 4

Max nTPM: 279.9
Min nTPM: 146.9
Sample A Female 279.9
Sample B Female 150.6
Sample C Male 182.3
Sample D Male 146.9
Periaqueductal gray
nTPM: 125.8
Samples: 3

Max nTPM: 137.5
Min nTPM: 116.0
Sample B Female 123.9
Sample C Male 137.5
Sample D Male 116.0
Superior colliculi
nTPM: 164.0
Samples: 4

Max nTPM: 192.0
Min nTPM: 96.4
Sample A Female 192.0
Sample B Female 96.4
Sample C Male 190.3
Sample D Male 177.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 165.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.1
Samples: 4

Max nTPM: 168.7
Min nTPM: 160.8
Sample A Male 168.7
Sample B Male 160.8
Sample C Female 165.3
Sample D Female 165.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
71495807 Antisense, RP_050913_03_F04, Mouse strain C57BL/6J (56 days, male) 10.3

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