MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:344.1 nTPM
HPA Brain:577.8 nTPM
GTEx:344.1 nTPM
FANTOM5:491.0 Scaled Tags Per Million
Pig:204.6 nTPM
Mouse:131.7 nTPM
Allen mouse:10.7 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 577.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 536.2
2586 Male, age 75, left hemisphere 980.5
1833 Male, age 53, unknown 569.5
1830 Male, age 51, unknown 535.4
1870 Female, age 42, unknown 521.6
2828 Female, age 72, unknown 512.3
2019 Male, age 18, unknown 503.8
2411 Female, age 72, unknown 499.0
2666 Male, age 74, left hemisphere 483.8
1827 Male, age 72, unknown 431.8
2219 Male, age 76, both hemispheres 324.6
Dorsal raphe nucleus
nTPM: 455.5
2016 Female, age 72, unknown 494.0
2750 Male, age 76, both hemispheres 472.2
2298 Female, age 72, unknown 466.0
1828 Male, age 53, unknown 459.3
2047 Male, age 72, unknown 386.1
Inferior colliculus
nTPM: 434.2
1848 Female, age 42, unknown 495.9
2849 Male, age 72, unknown 439.0
1890 Male, age 53, unknown 422.7
2097 Female, age 72, unknown 379.2
Median raphe nucleus
nTPM: 442.3
2220 Male, age 76, midline 442.3
Periaquaductal grey, anterior
nTPM: 501.2
2502 Female, age 75, unknown 569.6
1795 Male, age 51, unknown 476.6
1947 Male, age 18, unknown 457.4
Periaquaductal grey, dorsal
nTPM: 432.5
2850 Male, age 76, both hemispheres 543.0
2464 Female, age 72, unknown 437.0
1840 Male, age 53, unknown 378.2
1831 Male, age 72, unknown 371.9
Periaquaductal grey, lateral
nTPM: 479.0
2140 Male, age 76, both hemispheres 590.6
2272 Male, age 74, both hemispheres 438.2
2053 Male, age 18, unknown 408.3
Pretectal area
nTPM: 458.4
2007 Male, age 72, unknown 508.5
2316 Male, age 76, right hemisphere 504.6
1817 Female, age 42, unknown 500.8
1815 Male, age 53, unknown 486.4
2224 Female, age 72, unknown 467.0
2273 Male, age 74, both hemispheres 460.7
2667 Female, age 75, unknown 442.0
2825 Male, age 18, unknown 430.0
1944 Female, age 72, unknown 421.0
2407 Male, age 75, both hemispheres 420.2
1816 Male, age 51, unknown 401.7
Red nucleus
nTPM: 577.8
1904 Male, age 53, unknown 693.9
2227 Male, age 72, unknown 692.1
2769 Male, age 72, unknown 685.9
1865 Male, age 51, unknown 651.9
1954 Female, age 42, unknown 638.0
2785 Male, age 18, unknown 599.8
1821 Female, age 72, unknown 592.1
2503 Female, age 72, unknown 539.5
2588 Male, age 74, left hemisphere 507.6
2584 Male, age 75, left hemisphere 465.1
2725 Female, age 75, unknown 438.1
2823 Male, age 76, right hemisphere 429.5
Substantia nigra
nTPM: 448.3
2583 Male, age 75, right hemisphere 548.6
2699 Male, age 18, unknown 521.8
2590 Female, age 75, unknown 493.7
1851 Male, age 51, unknown 481.5
1916 Female, age 42, unknown 474.1
1889 Female, age 72, unknown 454.2
2665 Male, age 74, both hemispheres 402.3
2409 Female, age 72, unknown 400.7
2241 Male, age 72, unknown 359.0
1941 Male, age 53, unknown 347.4
Superior colliculus
nTPM: 471.9
1995 Male, age 72, unknown 563.9
2664 Male, age 75, both hemispheres 522.6
2261 Male, age 18, unknown 519.0
1913 Female, age 42, unknown 511.5
2668 Female, age 75, unknown 493.8
1796 Male, age 53, unknown 487.2
1839 Male, age 51, unknown 460.8
2087 Female, age 72, unknown 434.5
2587 Male, age 74, left hemisphere 395.9
1895 Male, age 76, right hemisphere 329.7
Ventral tegmental area
nTPM: 459.7
2223 Female, age 72, unknown 506.0
2218 Male, age 76, both hemispheres 476.0
2410 Female, age 72, unknown 471.3
2021 Male, age 53, unknown 448.8
1942 Male, age 51, unknown 430.2
1915 Female, age 42, unknown 426.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 344.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 344.1
Samples: 139

Max nTPM: 860.9
Min nTPM: 115.0
Std nTPM: 111.7
Median nTPM: 336.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 860.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 630.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 592.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 592.4
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 575.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 557.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 541.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 533.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 531.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 522.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 520.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 491.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 491.0
FF:10158-103A5 76 years, female 491.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 204.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 174.3
Samples: 4

Max nTPM: 195.0
Min nTPM: 148.7
Sample A Female 195.0
Sample B Female 163.3
Sample C Male 148.7
Sample D Male 190.2
Midbrain
nTPM: 204.1
Samples: 4

Max nTPM: 281.6
Min nTPM: 120.9
Sample A Female 274.0
Sample B Female 139.9
Sample C Male 281.6
Sample D Male 120.9
Periaqueductal gray
nTPM: 120.2
Samples: 3

Max nTPM: 126.2
Min nTPM: 111.5
Sample B Female 126.2
Sample C Male 122.9
Sample D Male 111.5
Superior colliculi
nTPM: 204.6
Samples: 4

Max nTPM: 244.2
Min nTPM: 182.0
Sample A Female 203.4
Sample B Female 182.0
Sample C Male 244.2
Sample D Male 188.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 139.2
Min nTPM: 120.8
Sample A Male 139.2
Sample B Male 120.8
Sample C Female 127.7
Sample D Female 139.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.7
70429393 Antisense, RP_050614_01_E12, Mouse strain C57BL/6J (56 days, male) 10.7

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