MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.0 nTPM
HPA Brain:31.3 nTPM
GTEx:50.0 nTPM
FANTOM5:53.6 Scaled Tags Per Million
Pig:18.7 nTPM
Mouse:19.8 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.5
1833 Male, age 53, unknown 31.9
1870 Female, age 42, unknown 30.4
1830 Male, age 51, unknown 29.5
2411 Female, age 72, unknown 27.8
2019 Male, age 18, unknown 27.7
1827 Male, age 72, unknown 26.2
2219 Male, age 76, both hemispheres 25.8
2828 Female, age 72, unknown 25.2
2666 Male, age 74, left hemisphere 22.1
2586 Male, age 75, left hemisphere 18.1
Dorsal raphe nucleus
nTPM: 31.3
2750 Male, age 76, both hemispheres 34.7
2298 Female, age 72, unknown 33.6
1828 Male, age 53, unknown 32.0
2016 Female, age 72, unknown 28.1
2047 Male, age 72, unknown 27.9
Inferior colliculus
nTPM: 27.1
1890 Male, age 53, unknown 28.9
2097 Female, age 72, unknown 27.4
2849 Male, age 72, unknown 26.2
1848 Female, age 42, unknown 25.9
Median raphe nucleus
nTPM: 29.5
2220 Male, age 76, midline 29.5
Periaquaductal grey, anterior
nTPM: 27.9
1947 Male, age 18, unknown 30.3
2502 Female, age 75, unknown 29.7
1795 Male, age 51, unknown 23.8
Periaquaductal grey, dorsal
nTPM: 28.4
2850 Male, age 76, both hemispheres 31.2
2464 Female, age 72, unknown 29.3
1831 Male, age 72, unknown 27.8
1840 Male, age 53, unknown 25.0
Periaquaductal grey, lateral
nTPM: 30.1
2272 Male, age 74, both hemispheres 35.3
2140 Male, age 76, both hemispheres 28.7
2053 Male, age 18, unknown 26.4
Pretectal area
nTPM: 28.3
2316 Male, age 76, right hemisphere 35.5
2273 Male, age 74, both hemispheres 33.8
2224 Female, age 72, unknown 30.2
1815 Male, age 53, unknown 28.7
1944 Female, age 72, unknown 28.0
2667 Female, age 75, unknown 27.5
1817 Female, age 42, unknown 27.1
1816 Male, age 51, unknown 25.3
2825 Male, age 18, unknown 25.3
2007 Male, age 72, unknown 25.2
2407 Male, age 75, both hemispheres 24.8
Red nucleus
nTPM: 29.5
1821 Female, age 72, unknown 36.4
2823 Male, age 76, right hemisphere 34.5
1954 Female, age 42, unknown 32.4
2725 Female, age 75, unknown 31.6
1904 Male, age 53, unknown 30.7
2785 Male, age 18, unknown 29.6
2769 Male, age 72, unknown 29.3
1865 Male, age 51, unknown 28.7
2227 Male, age 72, unknown 28.7
2503 Female, age 72, unknown 27.8
2588 Male, age 74, left hemisphere 22.4
2584 Male, age 75, left hemisphere 21.6
Substantia nigra
nTPM: 28.2
2241 Male, age 72, unknown 34.1
1851 Male, age 51, unknown 30.9
1916 Female, age 42, unknown 30.8
1889 Female, age 72, unknown 29.8
2699 Male, age 18, unknown 29.8
1941 Male, age 53, unknown 27.0
2590 Female, age 75, unknown 26.1
2665 Male, age 74, both hemispheres 26.0
2409 Female, age 72, unknown 25.8
2583 Male, age 75, right hemisphere 21.8
Superior colliculus
nTPM: 27.3
1895 Male, age 76, right hemisphere 31.6
1913 Female, age 42, unknown 31.5
1995 Male, age 72, unknown 29.5
1839 Male, age 51, unknown 29.4
2587 Male, age 74, left hemisphere 27.6
2261 Male, age 18, unknown 27.5
2668 Female, age 75, unknown 25.8
2087 Female, age 72, unknown 24.7
1796 Male, age 53, unknown 24.4
2664 Male, age 75, both hemispheres 21.4
Ventral tegmental area
nTPM: 28.0
2223 Female, age 72, unknown 30.4
2218 Male, age 76, both hemispheres 29.8
1915 Female, age 42, unknown 28.3
1942 Male, age 51, unknown 27.3
2410 Female, age 72, unknown 26.9
2021 Male, age 53, unknown 25.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.0
Samples: 139

Max nTPM: 86.4
Min nTPM: 22.8
Std nTPM: 12.7
Median nTPM: 49.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 83.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 81.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 79.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 77.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 76.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 73.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 71.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 71.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.6
FF:10158-103A5 76 years, female 53.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.7
Samples: 4

Max nTPM: 20.6
Min nTPM: 16.8
Sample A Female 20.6
Sample B Female 20.3
Sample C Male 16.8
Sample D Male 17.2
Midbrain
nTPM: 18.1
Samples: 4

Max nTPM: 20.5
Min nTPM: 16.8
Sample A Female 20.5
Sample B Female 18.3
Sample C Male 16.9
Sample D Male 16.8
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 19.3
Min nTPM: 16.7
Sample B Female 16.7
Sample C Male 18.8
Sample D Male 19.3
Superior colliculi
nTPM: 18.6
Samples: 4

Max nTPM: 19.3
Min nTPM: 17.8
Sample A Female 19.3
Sample B Female 17.8
Sample C Male 19.0
Sample D Male 18.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 19.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 19.8
Samples: 4

Max nTPM: 24.9
Min nTPM: 15.7
Sample A Male 24.9
Sample B Male 18.4
Sample C Female 15.7
Sample D Female 20.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68744092 Antisense, RP_050203_02_B08, Mouse strain C57BL/6J (56 days, male) 0.6

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