MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:0.3 nTPM
HPA Brain:32.4 nTPM
GTEx:0.3 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:19.0 nTPM
Mouse:7.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2219 Male, age 76, both hemispheres 18.7
2019 Male, age 18, unknown 7.8
1833 Male, age 53, unknown 7.7
2828 Female, age 72, unknown 7.5
1827 Male, age 72, unknown 7.3
2586 Male, age 75, left hemisphere 6.8
2411 Female, age 72, unknown 6.7
2666 Male, age 74, left hemisphere 6.7
1830 Male, age 51, unknown 5.5
1870 Female, age 42, unknown 5.0
Dorsal raphe nucleus
nTPM: 15.7
2047 Male, age 72, unknown 24.0
2750 Male, age 76, both hemispheres 21.8
2298 Female, age 72, unknown 17.2
1828 Male, age 53, unknown 10.6
2016 Female, age 72, unknown 4.9
Inferior colliculus
nTPM: 11.7
2097 Female, age 72, unknown 14.4
1890 Male, age 53, unknown 13.6
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 7.6
Median raphe nucleus
nTPM: 32.4
2220 Male, age 76, midline 32.4
Periaquaductal grey, anterior
nTPM: 10.4
2502 Female, age 75, unknown 16.5
1795 Male, age 51, unknown 7.7
1947 Male, age 18, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 8.5
1840 Male, age 53, unknown 9.6
2850 Male, age 76, both hemispheres 9.0
1831 Male, age 72, unknown 7.9
2464 Female, age 72, unknown 7.7
Periaquaductal grey, lateral
nTPM: 6.3
2053 Male, age 18, unknown 8.2
2140 Male, age 76, both hemispheres 6.3
2272 Male, age 74, both hemispheres 4.6
Pretectal area
nTPM: 11.5
1816 Male, age 51, unknown 18.9
1815 Male, age 53, unknown 17.7
1817 Female, age 42, unknown 16.5
1944 Female, age 72, unknown 15.1
2007 Male, age 72, unknown 14.1
2316 Male, age 76, right hemisphere 10.3
2667 Female, age 75, unknown 9.2
2825 Male, age 18, unknown 7.6
2224 Female, age 72, unknown 7.3
2407 Male, age 75, both hemispheres 6.1
2273 Male, age 74, both hemispheres 3.5
Red nucleus
nTPM: 8.1
2503 Female, age 72, unknown 12.0
2823 Male, age 76, right hemisphere 10.5
2725 Female, age 75, unknown 9.4
1904 Male, age 53, unknown 9.0
2785 Male, age 18, unknown 8.4
1954 Female, age 42, unknown 8.1
1821 Female, age 72, unknown 7.5
2584 Male, age 75, left hemisphere 7.5
2588 Male, age 74, left hemisphere 6.5
1865 Male, age 51, unknown 6.2
2227 Male, age 72, unknown 6.1
2769 Male, age 72, unknown 5.6
Substantia nigra
nTPM: 19.4
1916 Female, age 42, unknown 32.5
2241 Male, age 72, unknown 26.4
1851 Male, age 51, unknown 22.7
2665 Male, age 74, both hemispheres 20.8
2699 Male, age 18, unknown 17.8
1889 Female, age 72, unknown 17.2
2409 Female, age 72, unknown 16.5
2583 Male, age 75, right hemisphere 15.0
1941 Male, age 53, unknown 14.8
2590 Female, age 75, unknown 10.7
Superior colliculus
nTPM: 9.7
2087 Female, age 72, unknown 20.1
1895 Male, age 76, right hemisphere 13.1
2261 Male, age 18, unknown 12.1
1796 Male, age 53, unknown 11.1
2668 Female, age 75, unknown 8.8
1995 Male, age 72, unknown 7.5
1839 Male, age 51, unknown 7.3
2664 Male, age 75, both hemispheres 6.8
1913 Female, age 42, unknown 6.2
2587 Male, age 74, left hemisphere 4.5
Ventral tegmental area
nTPM: 17.7
2218 Male, age 76, both hemispheres 28.7
2410 Female, age 72, unknown 22.3
1942 Male, age 51, unknown 18.3
1915 Female, age 42, unknown 17.5
2223 Female, age 72, unknown 10.9
2021 Male, age 53, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 0.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 0.3
Samples: 139

Max nTPM: 2.0
Min nTPM: 0.0
Std nTPM: 0.3
Median nTPM: 0.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 2.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 1.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 1.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 1.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 1.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 1.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 1.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 1.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 1.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.0
FF:10158-103A5 76 years, female 0.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.0
Samples: 4

Max nTPM: 36.6
Min nTPM: 3.8
Sample A Female 22.5
Sample B Female 12.9
Sample C Male 36.6
Sample D Male 3.8
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 24.5
Min nTPM: 1.4
Sample A Female 1.4
Sample B Female 12.0
Sample C Male 20.9
Sample D Male 24.5
Periaqueductal gray
nTPM: 10.6
Samples: 3

Max nTPM: 19.7
Min nTPM: 5.9
Sample B Female 5.9
Sample C Male 19.7
Sample D Male 6.1
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 17.9
Min nTPM: 7.8
Sample A Female 8.8
Sample B Female 7.8
Sample C Male 12.2
Sample D Male 17.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.4
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.7
Sample A Male 6.7
Sample B Male 8.4
Sample C Female 7.1
Sample D Female 7.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71281235 Antisense, RP_050818_02_C06, Mouse strain C57BL/6J (56 days, male) 0.2

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