BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.5 nTPM
HPA Brain:62.4 nTPM
GTEx:28.5 nTPM
FANTOM5:37.8 Scaled Tags Per Million
Pig:109.2 nTPM
Mouse:24.2 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 34.4
2481 Female, age 94, left hemisphere 39.8
1857 Female, age 85, left hemisphere 38.4
1854 Male, age 80, left hemisphere 37.7
2290 Female, age 72, unknown 36.6
2846 Female, age 79, unknown 34.6
2289 Male, age 61, right hemisphere 31.5
2288 Male, age 75, left hemisphere 28.4
1781 Male, age 74, unknown 28.2
Globus pallidus, externus
nTPM: 62.4
2567 Female, age 72, unknown 85.7
2646 Male, age 61, right hemisphere 67.3
1996 Male, age 80, right hemisphere 64.5
2772 Female, age 79, unknown 52.6
2395 Male, age 75, both hemispheres 42.1
Globus pallidus, internus
nTPM: 57.1
2566 Female, age 72, unknown 77.2
2111 Female, age 85, right hemisphere 64.6
1818 Male, age 74, unknown 59.2
2037 Male, age 80, right hemisphere 57.9
2483 Female, age 94, right hemisphere 50.3
2778 Female, age 91, both hemispheres 50.0
2287 Male, age 75, right hemisphere 40.3
Nucleus accumbens
nTPM: 34.7
2732 Male, age 80, right hemisphere 45.2
2698 Female, age 72, unknown 42.6
2391 Female, age 94, left hemisphere 36.7
1806 Female, age 85, left hemisphere 35.7
1783 Male, age 74, unknown 34.2
2824 Male, age 61, right hemisphere 29.1
2286 Male, age 75, left hemisphere 28.3
1856 Female, age 91, right hemisphere 25.7
Nucleus basalis of Meynert
nTPM: 49.3
2569 Male, age 61, both hemispheres 80.6
2821 Male, age 75, both hemispheres 41.3
2484 Female, age 94, left hemisphere 38.0
2393 Male, age 80, right hemisphere 37.2
Nucleus of the diagonal band
nTPM: 27.1
1979 Male, age 74, unknown 33.2
2029 Male, age 61, right hemisphere 28.9
1812 Female, age 91, both hemispheres 25.5
2775 Male, age 80, right hemisphere 25.2
2195 Female, age 85, both hemispheres 22.6
Putamen
nTPM: 37.1
2647 Male, age 75, left hemisphere 48.2
2489 Female, age 72, unknown 45.6
2482 Female, age 94, left hemisphere 40.9
1829 Male, age 74, unknown 36.8
1937 Female, age 91, right hemisphere 30.2
2466 Female, age 79, unknown 29.9
1838 Male, age 80, right hemisphere 28.3
Septal nuclei
nTPM: 33.6
2394 Male, age 61, left hemisphere 60.4
2199 Male, age 80, right hemisphere 47.0
2059 Female, age 85, both hemispheres 37.6
1960 Male, age 74, unknown 23.5
2009 Female, age 91, both hemispheres 22.8
2629 Female, age 94, right hemisphere 22.2
2031 Female, age 72, unknown 21.9
Stria terminalis, bed nucleus
nTPM: 26.2
2201 Male, age 74, unknown 31.2
1974 Female, age 91, both hemispheres 25.7
2486 Female, age 94, both hemispheres 21.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.5
Samples: 246

Max nTPM: 62.0
Min nTPM: 5.2
Std nTPM: 10.9
Median nTPM: 23.0
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 62.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 61.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 57.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 57.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 55.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 54.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 53.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 52.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 52.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 51.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 51.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 24.7
Samples: 246

Max nTPM: 104.7
Min nTPM: 9.2
Std nTPM: 12.6
Median nTPM: 20.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 104.7
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 63.0
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 59.7
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 58.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 58.0
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 56.9
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 54.6
GTEX-13PL6-0011-R6a-SM-5O9C5 40-49 years, female 54.2
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 53.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 53.4
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 52.9
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Brain - Putamen (basal ganglia)
Average nTPM: 28.5
Samples: 205

Max nTPM: 82.3
Min nTPM: 8.7
Std nTPM: 11.1
Median nTPM: 27.2
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 82.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 61.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 57.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 56.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 55.6
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 54.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 52.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 52.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 52.5
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 51.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 50.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 37.8
FF:10164-103B2 76 years, female 37.8
Nucleus accumbens
Scaled Tags Per Million: 30.1
FF:10037-101F1 23-56 years, mixed 30.1
Putamen
Scaled Tags Per Million: 25.3
FF:10176-103C5 60 years, female 25.3
Globus pallidus
Scaled Tags Per Million: 35.6
FF:10161-103A8 76 years, female 41.4
FF:10175-103C4 60 years, female 29.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 109.2
Pig sample Sample description nTPM
Caudate
nTPM: 90.9
Samples: 4

Max nTPM: 122.7
Min nTPM: 59.9
Sample A Female 59.9
Sample B Female 122.7
Sample C Male 100.6
Sample D Male 80.5
Putamen
nTPM: 109.2
Samples: 4

Max nTPM: 117.6
Min nTPM: 97.2
Sample A Female 117.6
Sample B Female 105.8
Sample C Male 116.2
Sample D Male 97.2
Septum
nTPM: 95.6
Samples: 4

Max nTPM: 115.3
Min nTPM: 80.0
Sample A Female 97.5
Sample B Female 89.5
Sample C Male 115.3
Sample D Male 80.0
Ventral pallidum
nTPM: 107.1
Samples: 4

Max nTPM: 141.1
Min nTPM: 88.0
Sample A Female 101.1
Sample B Female 98.3
Sample C Male 141.1
Sample D Male 88.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 19.9
Sample A Male 23.2
Sample B Male 26.1
Sample C Female 19.9
Sample D Female 22.4
Septum
nTPM: 24.2
Samples: 4

Max nTPM: 27.3
Min nTPM: 21.5
Sample A Male 21.5
Sample B Male 27.3
Sample C Female 23.9
Sample D Female 23.9
Ventral forebrain
nTPM: 21.8
Samples: 4

Max nTPM: 28.2
Min nTPM: 18.6
Sample A Male 19.3
Sample B Male 21.0
Sample C Female 28.2
Sample D Female 18.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.2
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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