HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.6 nTPM
HPA Brain:39.8 nTPM
GTEx:26.6 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:120.9 nTPM
Mouse:18.5 nTPM
Allen mouse:0.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 39.8
Sample id Sample description nTPM
Hippocampus
nTPM: 39.8
2529 Female, age 94, left hemisphere 45.3
1855 Male, age 76, left hemisphere 41.7
1911 Female, age 85, right hemisphere 38.6
1898 Male, age 80, left hemisphere 38.2
2148 Female, age 91, left hemisphere 37.6
2621 Female, age 67, right hemisphere 37.6
Dentate gyrus
nTPM: 36.3
2530 Female, age 94, left hemisphere 45.7
2528 Male, age 74, both hemispheres 38.6
2531 Female, age 67, both hemispheres 37.0
2010 Male, age 76, both hemispheres 36.0
2246 Female, age 85, both hemispheres 33.4
1927 Female, age 91, both hemispheres 27.4
Entorhinal gyrus
nTPM: 36.1
2117 Female, age 91, right hemisphere 48.1
2686 Male, age 75, right hemisphere 41.8
2764 Male, age 80, right hemisphere 35.8
1787 Male, age 76, left hemisphere 31.6
2613 Female, age 94, left hemisphere 31.0
1938 Female, age 85, left hemisphere 28.6
Hippocampus, CA1
nTPM: 32.2
2527 Male, age 74, both hemispheres 39.9
2082 Female, age 91, right hemisphere 34.3
1873 Female, age 85, both hemispheres 33.2
2045 Male, age 76, both hemispheres 29.7
2749 Male, age 80, left hemisphere 24.2
Hippocampus, CA2
nTPM: 35.7
2437 Female, age 94, left hemisphere 40.6
2113 Female, age 91, right hemisphere 40.1
1963 Male, age 80, left hemisphere 39.9
1940 Female, age 85, left hemisphere 33.1
2249 Male, age 74, both hemispheres 33.0
1892 Male, age 76, both hemispheres 27.4
Hippocampus, CA3
nTPM: 35.7
2861 Female, age 67, both hemispheres 52.9
1891 Female, age 85, both hemispheres 42.0
1867 Male, age 76, both hemispheres 35.1
2436 Male, age 74, both hemispheres 33.9
2620 Female, age 94, left hemisphere 27.9
2137 Male, age 80, left hemisphere 22.7
Parahippocampal cortex
nTPM: 32.2
2692 Male, age 74, both hemispheres 43.6
2622 Female, age 67, right hemisphere 36.1
2018 Male, age 76, both hemispheres 34.4
1990 Female, age 91, right hemisphere 32.2
2532 Female, age 72, left hemisphere 31.0
2245 Female, age 91, both hemispheres 30.8
2250 Female, age 67, right hemisphere 30.1
1933 Female, age 85, both hemispheres 28.6
1850 Male, age 80, both hemispheres 28.4
2693 Female, age 94, both hemispheres 26.2
Perirhinal gyrus
nTPM: 24.8
1847 Female, age 91, left hemisphere 26.9
2521 Female, age 94, right hemisphere 26.3
1794 Male, age 80, right hemisphere 26.0
2848 Male, age 76, right hemisphere 22.8
1841 Female, age 85, right hemisphere 22.2
Subiculum
nTPM: 39.8
2042 Male, age 76, both hemispheres 46.4
2729 Female, age 91, right hemisphere 42.6
2619 Male, age 74, both hemispheres 40.9
2438 Female, age 94, left hemisphere 40.3
1901 Male, age 80, both hemispheres 36.7
1977 Female, age 85, both hemispheres 32.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.6
Samples: 197

Max nTPM: 54.9
Min nTPM: 11.6
Std nTPM: 9.0
Median nTPM: 25.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 54.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 49.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 48.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 48.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 47.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 47.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 45.9
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 45.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 45.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 44.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 44.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.8
FF:10153-102I9 76 years, female 46.6
FF:10169-103B7 60 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 120.9
Pig sample Sample description nTPM
Subiculum
nTPM: 111.0
Samples: 4

Max nTPM: 172.1
Min nTPM: 67.3
Sample A Female 172.1
Sample B Female 67.3
Sample C Male 119.4
Sample D Male 85.1
Dorsal hippocampus
nTPM: 90.7
Samples: 4

Max nTPM: 122.5
Min nTPM: 54.6
Sample A Female 122.5
Sample B Female 70.9
Sample C Male 114.6
Sample D Male 54.6
Entorhinal cortex
nTPM: 92.5
Samples: 4

Max nTPM: 133.1
Min nTPM: 70.5
Sample A Female 70.5
Sample B Female 77.5
Sample C Male 133.1
Sample D Male 88.8
Ventral hippocampus
nTPM: 120.9
Samples: 4

Max nTPM: 207.6
Min nTPM: 61.2
Sample A Female 137.4
Sample B Female 77.5
Sample C Male 207.6
Sample D Male 61.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.7
Samples: 4

Max nTPM: 17.3
Min nTPM: 16.2
Sample A Male 17.3
Sample B Male 16.2
Sample C Female 16.5
Sample D Female 16.8
Hippocampal formation
nTPM: 18.5
Samples: 4

Max nTPM: 20.7
Min nTPM: 16.7
Sample A Male 17.1
Sample B Male 16.7
Sample C Female 19.5
Sample D Female 20.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.8
73584759 Antisense, RP_051206_01_A10, Mouse strain C57BL/6J (56 days, male) 0.8

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